Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0539 ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGAGCCCCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTATTGCTAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGACACCTTTTTTGAGGCAAGCATCATATACCATCGGAAAACCTTTATTTATTGTCTCATTGTTGATTTTAGTGCCAGTGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCAGATGAGGGGGACCGCCATCCACACTCCATAATAGAGTGTGAGCCTAAGCGTGAAGTCATTTTACCATCTGTAATCTACATACAAAAGATTTTGCGGCGTAGGCCATTTCTCATCAAGAACCTTGAAAATGTCATGCGGAAATTTCTTCAGTCCTTGGAGCTTTTCGAGGAAAATGAGAGGAAAAAGTTGGCAATCTTCACTGCACTTGCTTTCTCCCAGAAGCTGTCTGGTCTCCCACCAGAAACTGTGTTCCAACCACTTCTCAAAGATAACCTTGTGGCCAAAGGGCTAGTTCTGTCATTTATGACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCAATTCTAAAACGGGGAAAAGTAGAGGAGAATCTTTTGGATATTTTCCCCCCTACAAAAAGATCTAGTGAAGCTTTCTCTGAGCATTTCACCAAGGAAGGACTGACAGCCTTGGTGGAGTATAATGACAAGAAGAATTTTGAGGTGAAACTTAAGGAAATGAAGTCTTCTTTAACAGCACAGATAACCGAGGAGGCTGATACATCTGAAGTCATTGAGACTGTGAAGCTGCGAGTTAGAGATGCTAAGCTGCCGGACATCGAGGTAGTGCGGGTCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTCCGTCAGGTAAAAACTTGGGCAGAACTGTTGAATACATTCTGCACCACTGGGAAACTTGAGCTGGAACTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAACTTATGAAGCTGTTCCCTGAGATTATTAGATCTCTTTATGACCAGGATGTACTGGCTGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACAGCAAGGGCAGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAACTGGCTGGAGGAGGCTGAAGAGGAGGAGTAG 1299 0.4411 MSSKERPTLGGTRIKTRKRNIAEPLDPAAFSDAVVQIYLDNAGDLELIAKSIESSDLNFSRYGDTFFEASIIYHRKTFIYCLIVDFSASVVFTGGRTQPGTTKPDEGDRHPHSIIECEPKREVILPSVIYIQKILRRRPFLIKNLENVMRKFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFMTDFFKEYLIDNSLDDLISILKRGKVEENLLDIFPPTKRSSEAFSEHFTKEGLTALVEYNDKKNFEVKLKEMKSSLTAQITEEADTSEVIETVKLRVRDAKLPDIEVVRVLWDVLMDAVQWSGKNQQQNANAALRQVKTWAELLNTFCTTGKLELELMYKVQMQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILHWFRKGTNSKGRQTFVKALEPFVNWLEEAEEEE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0539 432 CDD W2_eIF5C_like 237 425 IPR043510 -
Aed3g0539 432 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 75 - -
Aed3g0539 432 SUPERFAMILY ARM repeat 273 429 IPR016024 -
Aed3g0539 432 Pfam eIF4-gamma/eIF5/eIF2-epsilon 359 432 IPR003307 GO:0005515
Aed3g0539 432 SMART 542_3 346 431 IPR003307 GO:0005515
Aed3g0539 432 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 85 432 - -
Aed3g0539 432 Coils Coil 142 162 - -
Aed3g0539 432 Gene3D - 262 432 - -
Aed3g0539 432 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 1 75 - -
Aed3g0539 432 ProSiteProfiles W2 domain profile. 267 432 IPR003307 GO:0005515
Aed3g0539 432 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 85 432 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0539 321 428 Eukaryotic Initiation Factors Gene Family AT2G34970 31.818 3.82e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0539 - - gmx:100782537 775.007