Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0535 ATGGCCATGGAAAATCAAAATTCAGTTCTGGCGTCACTGCTCTGCATGGTTTTGTTGGGTCAATATTGGGTCATCTCTGTTGAAGCTGCACCTGCAACCTCTCTCATCACACAACTCCCAGGCTTTAGCGGCAATTTCCCATCAAAACACTATTCCGGATATATAAGTATTGATGGAAATGCTGAGAGTGGGAAGAACCTGTTCTACTACTTTGTTAGTTCAGAGAGAACTCCAGAGAAGGACCCAGTTGTGCTTTGGCTCAATGGTGGACCTGGCTGCTCCAGCTTTGATGGCTTCGTTTATGAACATGGACCATTCAACTTTGAGGCTGCAAATTCAAAGGGGAATCTACCCACTTTGCGTATCAATCCTTACAGTTGGTCTAAAGTTTCCAACATTATATATTTGGATTCCCCTGCTGGTGTTGGCCTCTCTTACTCCAAGAACACAAGCAAATATGTTACTGGGGACCTAGAAACTGCGTTTGATACCCATGCTTTCCTCTTAAAGTGGTTTCAGCAATTTCTAGAATTCCAGGCTAATCCATTTTATATTGCTGGGGAGTCTTATGCCGGAGTTTATGTGCCTACTCTAGCTTTTGAAGTTGCTAAAGGAATCCGGAGTGGTATAAAGCCCGTGATCAATTTGAAGGGTTACATGGTTGGAAATGGTGTCACGGACGAGACATTTGACGGCAATGCTCTCATCCCATTTGTGCACGGGATGGGCCTCATATCTGACACTATCTATGAGAATGTACTAGCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTAGACGAAAATGATGTGTGTTCTAAGACCATTGAAAAAGTTTATAGGGCCATTGATGGGCTTAACGTGTACAATATACTAGAGCCATGTTACCATTTCCCTGATGGTGTTGCAACAGCCAAAGCAAATGAAAATGAAAATGGAAGCTTACCAAAGAGTTTCAAGCAATTGGGAGTGACAGAGAGGCCTCTCCCAGTGAGGACGAGAATGTTTGGTAGAGCTTGGCCTTTTCGAGCACCAGTGAAACCTGGACTTGTTACATTATGGCCCCAATTGGCTCAAAGTAGTGAAACTACACATGTCAGATGTGTTAGTGATGAAGTAGCAACCTCATGGCTAAACAACGTTGCAGTGAGAAAAGCCATTCATGCTGAATCGGAAAAGGTGGCGGGTCCGTGGGGATTATGTACGGATAGGATAGAGTTTCATCACAATGCTGGAAGCATGATTCCTTACCACAAGAACCTAACCAGCAGGCTCGGCTACAAGGCACTTATTTTCAGTGGTGACCATGATATGTGTGTGCCATTTACCGGAAGTGAGGCTTGGACACGATCTTTGGGATATAAGATTATCGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGGAGCTGGGCACACCGTGCCGGAATATAAGCCACGTGAAGCCTTGGATTTTTACAGCCGTTGGTTGGAAGGAAAGCCAATAGTATAG 1548 0.4444 MAMENQNSVLASLLCMVLLGQYWVISVEAAPATSLITQLPGFSGNFPSKHYSGYISIDGNAESGKNLFYYFVSSERTPEKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAANSKGNLPTLRINPYSWSKVSNIIYLDSPAGVGLSYSKNTSKYVTGDLETAFDTHAFLLKWFQQFLEFQANPFYIAGESYAGVYVPTLAFEVAKGIRSGIKPVINLKGYMVGNGVTDETFDGNALIPFVHGMGLISDTIYENVLASCKGNYYDAYSLDENDVCSKTIEKVYRAIDGLNVYNILEPCYHFPDGVATAKANENENGSLPKSFKQLGVTERPLPVRTRMFGRAWPFRAPVKPGLVTLWPQLAQSSETTHVRCVSDEVATSWLNNVAVRKAIHAESEKVAGPWGLCTDRIEFHHNAGSMIPYHKNLTSRLGYKALIFSGDHDMCVPFTGSEAWTRSLGYKIIDEWRPWNSNNQVAGYLQAYENNLTFLTIKGAGHTVPEYKPREALDFYSRWLEGKPIV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0535 515 Gene3D - 415 511 - -
Aed3g0535 515 Pfam Serine carboxypeptidase 40 511 IPR001563 GO:0004185|GO:0006508
Aed3g0535 515 Gene3D - 369 407 - -
Aed3g0535 515 SUPERFAMILY alpha/beta-Hydrolases 36 514 IPR029058 -
Aed3g0535 515 ProSitePatterns Serine carboxypeptidases, histidine active site. 481 498 IPR033124 GO:0004185
Aed3g0535 515 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 196 IPR001563 GO:0004185|GO:0006508
Aed3g0535 515 PRINTS Carboxypeptidase C serine protease (S10) family signature 481 494 IPR001563 GO:0004185|GO:0006508
Aed3g0535 515 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 135 IPR001563 GO:0004185|GO:0006508
Aed3g0535 515 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 146 IPR001563 GO:0004185|GO:0006508
Aed3g0535 515 Gene3D alpha/beta hydrolase 29 328 IPR029058 -
Aed3g0535 515 PANTHER CARBOXYPEPTIDASE 22 513 - -
Aed3g0535 515 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 22 513 IPR001563 GO:0004185|GO:0006508
Aed3g0535 515 ProSitePatterns Serine carboxypeptidases, serine active site. 185 192 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0535 Aed-Chr3 3789097 3793111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0535 374 514 Calmodulin-binding Proteins AT2G22960 48.936 1.89e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0535 K16296 - gmx:100790895 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0535 3 3789097 3793111 Aed2g0609 2 4409745 4412652 PCT