Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0518 ATGGGGTCTATGAATTTGTTAGGTTTTTCTCTCTCTCCTCAGGAACAGCCTTCTAGTCAAGATCACTGTCAAACTGCACCTCGTTTTGGTTTCAACCCTGATGGAATCTCAAACACTGATGTAGCAGGAGACGGAGACTGCTTTGATCTCACTTCTCATGACTCAACTCCTCATCATTTACTCAACCTTCCTTCTTATGGCATTTACGAAGCATTTCATAGGAACAATAATATTCACACCACTCAAGATTGGAAGGAGAACTACAACAGTCAAAACTTGTTGTTGGGAACTTCATGCAGTAACCAAAACATGAACCACAACCAACAACAACAGCCAAAGCTTGAAAACTTCCTCGGTGGACACTCATTTGGAGAACATGAGCAAACATATGGTGGTAACTCAGCCTCTACAGATTACATGTTTCCAGCTCAGCCAGTCGCGACCGGTGGCAGTGGTAGTGGTAACAACAACAATAGTAACTCCATAGGATTATCCATGATAAAGACATGGTTGAGGAACCAACCACCACACTCAGAAAACAACAGCAACAACAATGAAAGTGGTGGCAATAGTAGAAGCAGTGTGCAGACTCTATCACTTTCCATGAGTACTGGTTCACAATCTAGCACATCGCTGCCCCTTCTCACTGCTAGTACTGTGGATAATGGAGAGAGTTCTTCTGATAATAACAAACAACAACCACACACCACTGCTTCTGCACTTGATACCACCCCAACCGGAGCCACTGAAACTGCACCCAGAAAGTCCATTGACACGTTTGGACAGAGAACTTCTATCTACCGTGGTGTAACAAGGCATAGGTGGACGGGGAGGTATGAGGCTCACCTGTGGGATAATAGTTGTAGAAGAGAGGGACAAACTCGCAAAGGAAGGCAAGGAGGTTATGACAAAGAAGATAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACGACAACAAATTTTCCAATTAGCCACTATGAGAAAGAGGTGGAGGAAATGAAGCACATGACTAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAGAGTAGTGGGTTTTCTCGCGGTGCGTCCATTTATCGAGGAGTAACGAGACACCATCAACATGGAAGGTGGCAAGCAAGGATTGGAAGAGTTGCAGGAAACAAGGATCTCTACCTGGGAACTTTCAGCACCCAAGAGGAGGCAGCAGAAGCATATGATGTTGCAGCAATAAAATTCCGAGGACTAAGTGCTGTCACAAACTTTGACATGAGCAGATATGACGTGAAAAGCATACTTGAGAGCACGACTTTACCAATTGGCGGTGCTGCAAAGCGTTTGAAGGATATGGAGCAGGTTGAACTGAGTGTGGATGGTCATAGTCATAGTCATAGTCATAGAGCAGAACAAGATCAAGATCATAGCAGCATCATGAACTCTCACCTAACTCAAGGAATCAACAACAACAACTTTGCAGTAGGAGGAACAACAACAACAACAAATCATCATAACTGGCACAATGCTCTTGCATTCCACCAACCTCAACCTTGCGCCACAATGCACTACCCTTATGGACAACAAAGACTGTGGTGCAAGCAAGAGCAACAAGACAACAATTCTAATGCCTCTCACCCTTTGTCTTCTTATCCTGATATTCATCAACTTCAGTTAGGGAACAATGGCACACATAACTTCTTTCACTCCAACTCCGGGTTGCACCCTATGTTGAGCATGGATTCTGCTTCCATTGAACATAGCTCTTCCTCTAATTCGGTTGTTTATGATGGTTATGGAGGTGGTGGTGGAGGCTATGTGATGCCTATGGGGACTACTAATGTTGTTGCAAGTGATGGTGATCAAAATGCACTTGGTTATGAAAGTGTATTGTATGGTTGTACAGCTGATCCTTATCATGCACATGCGAGGAACTTGTATTATCTTTCTCAACAGCAACCACCATCTTCTGTGGATCATGCAGTGAAGGCTAGTGCATATGATCAAGGATCTGCATGCAACAATTGGGTTCCAACTGCTATTCCAACTCATGCACCAAGGTCTGCTGCTATGGCTGCTCTCTGCCATGGTGCACCACCCTTCTCGTTATTGCATGAATAG 2115 0.4444 MGSMNLLGFSLSPQEQPSSQDHCQTAPRFGFNPDGISNTDVAGDGDCFDLTSHDSTPHHLLNLPSYGIYEAFHRNNNIHTTQDWKENYNSQNLLLGTSCSNQNMNHNQQQQPKLENFLGGHSFGEHEQTYGGNSASTDYMFPAQPVATGGSGSGNNNNSNSIGLSMIKTWLRNQPPHSENNSNNNESGGNSRSSVQTLSLSMSTGSQSSTSLPLLTASTVDNGESSSDNNKQQPHTTASALDTTPTGATETAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEDKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKDMEQVELSVDGHSHSHSHRAEQDQDHSSIMNSHLTQGINNNNFAVGGTTTTTNHHNWHNALAFHQPQPCATMHYPYGQQRLWCKQEQQDNNSNASHPLSSYPDIHQLQLGNNGTHNFFHSNSGLHPMLSMDSASIEHSSSSNSVVYDGYGGGGGGYVMPMGTTNVVASDGDQNALGYESVLYGCTADPYHAHARNLYYLSQQQPPSSVDHAVKASAYDQGSACNNWVPTAIPTHAPRSAAMAALCHGAPPFSLLHE 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0518 704 CDD AP2 364 425 IPR001471 GO:0003700|GO:0006355
Aed3g0518 704 MobiDBLite consensus disorder prediction 148 260 - -
Aed3g0518 704 PANTHER BNAC02G44180D PROTEIN 5 630 - -
Aed3g0518 704 SUPERFAMILY DNA-binding domain 364 425 IPR016177 GO:0003677
Aed3g0518 704 SUPERFAMILY DNA-binding domain 265 331 IPR016177 GO:0003677
Aed3g0518 704 CDD AP2 265 331 IPR001471 GO:0003700|GO:0006355
Aed3g0518 704 MobiDBLite consensus disorder prediction 127 141 - -
Aed3g0518 704 MobiDBLite consensus disorder prediction 1 24 - -
Aed3g0518 704 Gene3D AP2/ERF domain 266 331 IPR036955 GO:0003700|GO:0006355
Aed3g0518 704 Gene3D AP2/ERF domain 365 425 IPR036955 GO:0003700|GO:0006355
Aed3g0518 704 ProSiteProfiles AP2/ERF domain profile. 365 423 IPR001471 GO:0003700|GO:0006355
Aed3g0518 704 MobiDBLite consensus disorder prediction 120 260 - -
Aed3g0518 704 Pfam AP2 domain 266 321 IPR001471 GO:0003700|GO:0006355
Aed3g0518 704 Pfam AP2 domain 365 415 IPR001471 GO:0003700|GO:0006355
Aed3g0518 704 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 630 - -
Aed3g0518 704 SMART rav1_2 266 335 IPR001471 GO:0003700|GO:0006355
Aed3g0518 704 SMART rav1_2 365 429 IPR001471 GO:0003700|GO:0006355
Aed3g0518 704 PRINTS Ethylene responsive element binding protein signature 267 278 IPR001471 GO:0003700|GO:0006355
Aed3g0518 704 PRINTS Ethylene responsive element binding protein signature 405 425 IPR001471 GO:0003700|GO:0006355
Aed3g0518 704 ProSiteProfiles AP2/ERF domain profile. 266 329 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0518 Aed-Chr3 3700133 3704313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0518 161 450 AP2-EREBP Transcription Factor Family AT5G17430 70.648 4.10e-134 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Aed3g0518 AP2 2.4e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0518 K09285 - gmx:100797584 1060.83