Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0494 ATGGGTGTGGCTCAAAACATTCCTGATGCGGAGGAGGGGACCTTGGAGATTGGAATGGAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGGACCCAAGTTTCAAGAGATTGTTAATATTCGCTTAGGAGATGGAACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTCAAAAGGCTGTTGTTCAGGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGACCTAGATAACATGCTAACTATTAGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAAGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTTGAGGGCGGAGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACACTTTTCCTTAATCTGGCAAACGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTATCCCGGGTACATGTATACAGATCTTGCAACTATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGATCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGACATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGACAGATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTTGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATTTGGAATTTTTGGAAAAGTTTGAGAGGAAGTTTGTTGCACAAGGAGCTTACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGTGAGCTTCTTCATCGTATTCCTGCAAAGACTCTTGATCAGTTCTACAGCCGAGATGCCGGTAACTGA 1383 0.4317 MGVAQNIPDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGQKAVVQVFEGTSGIDNKFTTVQFTGEDLDNMLTIRSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0494 460 CDD ATP-synt_V_A-type_beta_C 359 453 - -
Aed3g0494 460 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Aed3g0494 460 Hamap V-type ATP synthase beta chain [atpB]. 18 458 IPR022879 -
Aed3g0494 460 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 3 95 - -
Aed3g0494 460 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 100 460 - -
Aed3g0494 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 355 IPR027417 -
Aed3g0494 460 Gene3D - 96 459 - -
Aed3g0494 460 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 3 95 IPR022879 -
Aed3g0494 460 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 100 460 IPR022879 -
Aed3g0494 460 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 118 349 IPR000194 GO:0005524
Aed3g0494 460 CDD V_A-ATPase_B 101 351 - -
Aed3g0494 460 ProSitePatterns ATP synthase alpha and beta subunits signature. 340 349 IPR020003 GO:0005524
Aed3g0494 460 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Aed3g0494 460 Gene3D - 12 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0494 Aed-Chr3 3517852 3522806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0494 1 460 Primary Pumps ATPases(2) AT4G38510 88.344 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0494 K02147 - gmx:100814088 873.233