Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0480 ATGCCTCCGAGAATAGCGAAGAGAGGTGCTGTGGCGAAGAGGGCACCGAGGGGATCCTCAAAGACTGCACCTGAGAATCAGCATGAGCCTGAAACTGCGGAAGTGGTTTTGAAAAATAATGAAGAAAATCCAGTTGTTGATGCTGGGGTGGAAGAGAAGCCCGTTGATGTCGATCAAGAACATGAGGAAGTGCCAAATGGGTCGGCTAAGGTGGAAAACAATGAAGAGGAGGTTAAGGAATCTATAGATGAATATGAAAAAGATGAACACTTAGATTTGGAGGATAATTATCCTGAGTATGAAGCAGAGGAGTATGGTGGTGTTGACTACGATGAGAAGGAAATTGAACAAGATGAAGATAAGGGTGCTACCGAGCATGATCTGAAGAAGGTTTTCAGTAAAGTTGGGGTAGTTACTGAAGTCCGGCTGATGATAAATCCCCAGACTAAAAGGAACAAGGGATTTGCATTCTTGCGTTTTGAAACAGTTGAGCAAGCGAGAAGAGCTGTGGTTGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACTTGGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTAAGGGAGAAACTGAAACATTATGGAGTAGAAAATGTGGAGGATTTGACTTTAATAGAAGATGATACCAATGAGGGAATGAACCGAGGATTTGCATTTTTGGAGTTTGCATCTCGTCCAGATGCTAAGGAAGCCTATAAGCGACTGCAGAAGAGAGATGTTGTGTTTGGAGTTGAGAAGCCTGCAAAGGTTTCCTTTGCTGACTCCTTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATTCACTTCCTCCTACATGGGATGAAGATTATGTCTGGGATCTTCTTAAGAAATATGGAGAGATTGACAAAATTGAGCTTGCTAGGGACATGCCAGCTGCTCGGAGGAAGAATTATGGATTTGTTACATTTAGTACACATGCTGCTGCTGTGGAATGTGCTGATAGTATTACAAGTTTAGGGTTAGGCGATGGTGACAAAAAGGCAAAAGTAAGGGCTAGATTGTCACGACCTCTTTCAAAACCTCTCCAGAGAGGCCGTGGAAAACATGTTAATCATGGGGACTTCCGTTCTGGCCGCAATTCTGGAAGATTTGTAAGGCCTTCTCGGAGTCGACCTCCACTGCATAGTCTTCCTGCCCGTGTGTTGAGAGGAGTTGGAAGTCGTGCTCCGCCAGTTAGACCTATTAGTATGAGAAGTAGACGTCCTGTCTCATCCATGCTAGAAAGAGCCAGGCCAGTGCCTCCTCCAGCTAGAAGCTATGACAGAAGATTCACTGCTCCTGCATATCCAAAAAGTGGCATGAAAAGAGATTATAGTCGACGTGAGGATCTACCACCTCTGAGAAGTAGAGTTCCTGCAGATTATGGCTCTAGGATAGCCTCTCAGAGGCACACATCTTATAGGGATTATCCTGCCCGTGGCTCTGACTACCCTGAGCTGCATAGAAGTACATCTCGTGCTGCACCAAAGAGAGGTTATGTTGATGATGGCTATAGCCAAAGATTTGAGAGGGCTCCTCCTCCCCCTCCCCCCCATCTAAGTTACCGTGAAGGACGGCTCCGTGATTATGACACTCTATCAGGCTCAAAACGTCCTTATACTGCTATAGATGATGTTCCTCGGTATGATACTGGTGCTCGCCAATCAAGATCTCGTTTAGATTATGACTATGGAAGTAGTGCTTCAAAGTATGGAGATGCTTATGGTGACAGACTTGGAAGATCTAGTCTTGGGTATAGTGGCAGCAGAAATTCTATTTCTAGTCAAGACTTACATGGGACATATGGCAGTCGACAAGGCATGAGTTATGGCGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATGTACTCATCAAGTTATGGTGGTGATTATGTATCCCGTGGAAGTGATGTTGGTGGCCGTTCATATTCATCTATGTATTCTGGTAGAGGTGTGGGTGGTAGCAGCAGTTATATGGGTGGTGGTGGATCTGGATCTTATTATTGA 2088 0.4444 MPPRIAKRGAVAKRAPRGSSKTAPENQHEPETAEVVLKNNEENPVVDAGVEEKPVDVDQEHEEVPNGSAKVENNEEEVKESIDEYEKDEHLDLEDNYPEYEAEEYGGVDYDEKEIEQDEDKGATEHDLKKVFSKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALREKLKHYGVENVEDLTLIEDDTNEGMNRGFAFLEFASRPDAKEAYKRLQKRDVVFGVEKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPTWDEDYVWDLLKKYGEIDKIELARDMPAARRKNYGFVTFSTHAAAVECADSITSLGLGDGDKKAKVRARLSRPLSKPLQRGRGKHVNHGDFRSGRNSGRFVRPSRSRPPLHSLPARVLRGVGSRAPPVRPISMRSRRPVSSMLERARPVPPPARSYDRRFTAPAYPKSGMKRDYSRREDLPPLRSRVPADYGSRIASQRHTSYRDYPARGSDYPELHRSTSRAAPKRGYVDDGYSQRFERAPPPPPPHLSYREGRLRDYDTLSGSKRPYTAIDDVPRYDTGARQSRSRLDYDYGSSASKYGDAYGDRLGRSSLGYSGSRNSISSQDLHGTYGSRQGMSYGGGSFGGSDGGMYSSSYGGDYVSRGSDVGGRSYSSMYSGRGVGGSSSYMGGGGSGSYY 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0480 695 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 276 IPR000504 GO:0003723
Aed3g0480 695 PANTHER RNA RECOGNITION MOTIF 120 695 - -
Aed3g0480 695 MobiDBLite consensus disorder prediction 422 581 - -
Aed3g0480 695 CDD RRM_SF 291 365 - -
Aed3g0480 695 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 120 - -
Aed3g0480 695 Gene3D - 118 192 IPR012677 -
Aed3g0480 695 PANTHER RNA RECOGNITION MOTIF 1 120 - -
Aed3g0480 695 MobiDBLite consensus disorder prediction 508 523 - -
Aed3g0480 695 MobiDBLite consensus disorder prediction 45 77 - -
Aed3g0480 695 MobiDBLite consensus disorder prediction 374 410 - -
Aed3g0480 695 SUPERFAMILY RNA-binding domain, RBD 284 397 IPR035979 GO:0003676
Aed3g0480 695 Coils Coil 68 91 - -
Aed3g0480 695 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 182 IPR000504 GO:0003723
Aed3g0480 695 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 348 IPR000504 GO:0003723
Aed3g0480 695 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 260 IPR000504 GO:0003723
Aed3g0480 695 Gene3D - 281 400 IPR012677 -
Aed3g0480 695 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 371 IPR000504 GO:0003723
Aed3g0480 695 SUPERFAMILY RNA-binding domain, RBD 121 258 IPR035979 GO:0003676
Aed3g0480 695 MobiDBLite consensus disorder prediction 1 85 - -
Aed3g0480 695 MobiDBLite consensus disorder prediction 468 482 - -
Aed3g0480 695 CDD RRM_SF 194 261 - -
Aed3g0480 695 Gene3D - 193 275 IPR012677 -
Aed3g0480 695 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 190 IPR000504 GO:0003723
Aed3g0480 695 SMART rrm1_1 120 186 IPR000504 GO:0003723
Aed3g0480 695 SMART rrm1_1 290 365 IPR000504 GO:0003723
Aed3g0480 695 SMART rrm1_1 193 272 IPR000504 GO:0003723
Aed3g0480 695 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 120 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0480 Aed-Chr3 3468991 3476606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0480 117 338 Eukaryotic Initiation Factors Gene Family AT3G16380 23.577 6.37e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0480 - - gmx:100811387 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1725 2 21858372 21865937 Aed3g0480 3 3468991 3476606 PCT