Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0451 ATGACACTTTCCGATCTTATTCAACATTACATGCATCATGATGGAGCCAACAACATTGTGGAGGGTGCTAAAGCAGTACAAGAGGAAGTTCCGAAGTGGACGAGGTACAAAGGAGTAAGGCGTAGGGCACATGGAAAGTTTGCTGCAGAGATAAAAGAGCCAAAGAAAAATGGTAGGGTTTGGCTTGGCACTTATGACACTGAAGAGGAAGCTGCTTTGGCTTATGACAATGCTGCTTTCGAGATTAGAGGCTCCAAAGCTAAGCTTAATTTTCCTCATCTCATTCCATCAAGTAGCCAGATGAGTGACCCTTTCAGGATCATCGTTTAG 330 0.4394 MTLSDLIQHYMHHDGANNIVEGAKAVQEEVPKWTRYKGVRRRAHGKFAAEIKEPKKNGRVWLGTYDTEEEAALAYDNAAFEIRGSKAKLNFPHLIPSSSQMSDPFRIIV 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0451 109 Pfam AP2 domain 34 84 IPR001471 GO:0003700|GO:0006355
Aed3g0451 109 PRINTS Ethylene responsive element binding protein signature 74 94 IPR001471 GO:0003700|GO:0006355
Aed3g0451 109 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Aed3g0451 109 CDD AP2 34 94 IPR001471 GO:0003700|GO:0006355
Aed3g0451 109 PANTHER ETHYLENE RESPONSE FACTOR 21 95 - -
Aed3g0451 109 PANTHER DNA-BINDING DOMAIN 21 95 IPR044808 GO:0003700|GO:0009873
Aed3g0451 109 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Aed3g0451 109 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Aed3g0451 109 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Aed3g0451 109 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0451 Aed-Chr3 3191268 3191597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0451 32 107 AP2-EREBP Transcription Factor Family AT2G44840 68.831 3.72e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed3g0451 AP2 9.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0451 K09286 - gmx:100819961 177.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1770 2 22412516 22413118 Aed3g0451 3 3191268 3191597 PCT