Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0450 ATGGCTTCAGCCACCGTGGATTCCGATTTTGCATTCTTGGAATCTGTTCAACAATACCTACTTGGACATGACTCCAGCAATCTCATGTCTGAAACCCATCAAGTTGCATCTCATGATCCATTTTCAAGCCCTAAATGTGATGGTGATTCGGAGAACATTGTTTTCCGGAGAGAGGATGCAACTGCTGCGGTGGCACGTGATATTCACGCGCCACCAACATGGAAGCATTACAGAGGGGTGAGACGTAGGCCGTGGGGAAAGTTTGCGGCAGAGATTAGGGATCCAAAGAAGAATGGAGCTAGGGTTTGGCTTGGTACATATGACACAGAAGAGAAAGCAGCTTTGGCTTATGACAAAGCTGCTTTCAAAATGCGTGGCCGAAAGGCCAAGCTGAATTTTCCTCACCTTATTGACTCCGACAATGAAATATTGTCAGAAGAGGTGGTGGTGACAACTTCTAAGAGGAGTTTGTCTGAAATTTCTCAATCGTTGACATTACCATCATCACCATCATCATGTTCAGATAACAGCTCAGAGTCACAAGGGATAAAGAGAAGGAAGAGCTTGGCTGATCTACTGAATAAATTAGCCAAGAATAGAAGCCAAGTCAAGGTGGAATGTTGA 624 0.4471 MASATVDSDFAFLESVQQYLLGHDSSNLMSETHQVASHDPFSSPKCDGDSENIVFRREDATAAVARDIHAPPTWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTEEKAALAYDKAAFKMRGRKAKLNFPHLIDSDNEILSEEVVVTTSKRSLSEISQSLTLPSSPSSCSDNSSESQGIKRRKSLADLLNKLAKNRSQVKVEC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0450 207 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Aed3g0450 207 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Aed3g0450 207 PANTHER DNA-BINDING DOMAIN 1 202 IPR044808 GO:0003700|GO:0009873
Aed3g0450 207 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Aed3g0450 207 PRINTS Ethylene responsive element binding protein signature 116 136 IPR001471 GO:0003700|GO:0006355
Aed3g0450 207 SUPERFAMILY DNA-binding domain 76 135 IPR016177 GO:0003677
Aed3g0450 207 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Aed3g0450 207 CDD AP2 75 136 IPR001471 GO:0003700|GO:0006355
Aed3g0450 207 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Aed3g0450 207 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 202 - -
Aed3g0450 207 MobiDBLite consensus disorder prediction 160 179 - -
Aed3g0450 207 MobiDBLite consensus disorder prediction 160 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0450 Aed-Chr3 3187488 3188111 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0450 76 139 AP2-EREBP Transcription Factor Family AT2G44840 84.375 7.93e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed3g0450 AP2 4.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0450 K09286 - gmx:548037 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0450 3 3187488 3188111 Aed3g0450 3 3187488 3188111 ECH
Aed2g1771 2 22425046 22425648 Aed3g0450 3 3187488 3188111 PCT