Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0449 ATGTCATCCACCACCACGGATTCAGATAGTGCATATTTGGAACAAGTTCAACAATATCTCCTTCAAAATGATTCAAGTGTCAAATTAGAGCACCCTAATGAAGCGCGTGAAGTGAACGCGCCACCCAAATGGAGGCGTTACCGTGGTGTGAGGCGTAGGCCGTGGGGGAAGTTCGCGGCAGAGATAAGAGATCCAAAGAAAAATGGAGCTAGGATTTGGCTCGGAACTTATGTGACTGAGGAGGAAGCAGCTTTGGCTTATGACAAAGCTGCTTTCAAGATGCGTGGCCGAAAGGCTAAGCTGAATTTTCCTCACCTCATTGGCTCCGATGTGCCATCGGAGCCACCGAGTGTCACGGCTTCTAAGCGGATCTTACCAGAGCCTTCTCCCCCAACATCTCCGGATGATAGTTGTGAGTCAAAAGGGTCAAAGAGGAGGAAGAGCTTAGTTGATTTACTCAATAACTTAGCCAAGAATAAAAGCCAGGCTAAGGTGGTTGAAATGGCCTTAGAGGCAAAGGAGGTTGAGCAATGGGTGAATGATCAATTGAATGATTGCACTCTAATCTCGTGCTCCTAG 579 0.475 MSSTTTDSDSAYLEQVQQYLLQNDSSVKLEHPNEAREVNAPPKWRRYRGVRRRPWGKFAAEIRDPKKNGARIWLGTYVTEEEAALAYDKAAFKMRGRKAKLNFPHLIGSDVPSEPPSVTASKRILPEPSPPTSPDDSCESKGSKRRKSLVDLLNNLAKNKSQAKVVEMALEAKEVEQWVNDQLNDCTLISCS 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0449 192 CDD AP2 54 106 IPR001471 GO:0003700|GO:0006355
Aed3g0449 192 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Aed3g0449 192 PRINTS Ethylene responsive element binding protein signature 86 106 IPR001471 GO:0003700|GO:0006355
Aed3g0449 192 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677
Aed3g0449 192 PANTHER DNA-BINDING DOMAIN 1 162 IPR044808 GO:0003700|GO:0009873
Aed3g0449 192 MobiDBLite consensus disorder prediction 108 144 - -
Aed3g0449 192 Gene3D AP2/ERF domain 45 105 IPR036955 GO:0003700|GO:0006355
Aed3g0449 192 ProSiteProfiles AP2/ERF domain profile. 46 104 IPR001471 GO:0003700|GO:0006355
Aed3g0449 192 Pfam AP2 domain 46 96 IPR001471 GO:0003700|GO:0006355
Aed3g0449 192 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 162 - -
Aed3g0449 192 SMART rav1_2 46 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0449 Aed-Chr3 3183745 3184323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0449 43 129 AP2-EREBP Transcription Factor Family AT2G44840 71.264 5.95e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed3g0449 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0449 K09286 - gmx:102663872 302.753