Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0441 ATGAATCGTAGAGTGAGGAGGAAGGTGGCGAGGAAAAACAAAGGGAATGTGGTGCAGTCTAGTTTCCCTGAAGTTCAAGATGAGGTTTTGGATTTGGAACACCAAAGGCAAGGAGTTGTTGATTGGAAGTGCTTGCCTGATGATACAGTAATTCAGCTGTTGTCATGTCTGAGTTATCGAGATCGAGCTAGCTTGTCGTCAACTTGTAAGACATGGAGGTCTCTTGGTAGCTCCCCCTGTCTGTGGACTTCTCTGGATCTTCGTTCACACAGGTTTGATGGCAGCATGGCTTCATCGCTTGCTCCTAGGTGTGTGCATCTTCAGAAGCTCAGGTTTCGCGGGGCAGAGTCTGCTGATGCAATAATTCATCTTCGAGCTAGGAACTTGCGTGAATTGAGTGGTGACTATTGCAGAAAGATTACTGATGCAACGCTTTCGGTGATTGTGGCCCGTCATGAGTTACTTGAGAGCCTTCAGCTTGGACCGGATTTCTGCGAGAGAATAAGTAGCGATGCTATTAAAGCAATAGCTCATTGTTGTCCTAAATTGAATAAACTTAGACTCTCAGGCATCAGGGACGTAAATGCTGATGCTATTAATGCTTTGGCTAAACATTGTCCAAAGTTGTCTGATATTGGGTTCATTGATTGTCTGAACGTTGACGAGGTTGCGCTGGGAAATGTGTTATCAGTTTGTTTCCTTTCTGTTGCGGGGACATCAAGTATGAAATGGGGTGTGGTTTCCCATCTTTGGCATAAACTTCCTAACCTGATTGGGTTAGATGTTTCAAGAACTGATATTGGTCCATCTGCTGTTTTCAGAATGTTATCCTTATCACAGAATTTGAGGGTTTTAATTGCTCTGAATTGTTCTGCCCTTGAAGAAGACACTAGCTTTTCTGCTAGCAAATATAAAAACAAGTTATTAATTTCCCTTCGGACTGATATTTTTAAAGGTCTGGCTTCTTTATTTTTTGATAATACAAGGAGTGGAAAGAATGTATTTTTGGACTGGAGGACCCTAAAGAATAATGATAAGGACCTCAATGAAATTATACCCTGGCTTGAGTGGATGCTATCCCATACACTTTTGCGTTCTGCTGAGAGTCCCCAACAGGGTCTTGATGGTTTCTGGGTTGAACAAGGTGGAGCGCTTTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGACGTTCAAGAGAGGGCAGCCACAGGTCTTGCAACTTTTGTTGTAATTGATGACGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGAGGCATACGCCTCTTACTTGGCCTTGCAAGATCTTGGAGGGAAGGGCTTCAGTCCGAGGCAGCTAAGGCCATTGCAAATTTGTCCGTCAATGCCAATGTGGCCAAAGCTGTTGCAGAAGAGGGTGGGATTGAGATTCTTGCTGGTTTGGCTAGGTCAATGAACAAGCTGGTGGCTGAGGAGGCTGCTGGAGGATTATGGAATCTCTCTGTCGGAGAAGAGCACAAGGGTGCTATTGCTGAAGCTGGTGGAATACAAGCTTTAGTGGATCTTATATTCAAGTGGTCCTCTAGTGGAGATGGAGTTTTAGAGCGTGCAGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGTACAGAGGTTGCACTGGCAGGAGGTGTACATGCTCTGGCTGCTCGTGCATTGGCTAACTTAGCTGCCCATGGAGATAGTAACAGTAACAATTCTGCTGTTGGACAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTTACTCGCTCTCCCCATGAGGGTGTCAGGCAGGAGGCTGCTGGTGCACTTTGGAATTTGTCATTTGACGATAGAAATCGAGAGGCCATTGCTGCAGCTGGTGGAGTTCAGGCCTTGGTTGCTCTTGCCCAAGCCTGTGCTAATGCCTCTCCTGGACTTCAAGAGAGGGCTGCTGGTGCTCTGTGGGGATTGTCAGTCTCAGAAACTAATAGTGTTGCCATTGGACGAGAAGGAGGTGTTGCACCACTGATTGCACTTGCGCGGTCTGAAGCAGAGGATGTTCATGAAACTGCTGCAGGAGCACTATGGAATCTTGCTTTCAATGCTAGTAATGCTCTAAGAATAGTAGAGGAAGGCGGAGTATCTGCACTCGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGATTCATGGCTGCATTAGCATTGGCTTACATGTTTGACGGGAGAATGGATGAATATGCTTTAGTAGGCACTTCATCTGAAAGTGTTTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCTTTTGTTCTTATGTTCTCTGATCCACAAGCATTTGCAGCTGCTGCTGCATCATCTGCTCCTGCAGCATTAGCACTGGTTACTAAAGGTGCATGTATACAAGAAGCAGGACATTTGAGATGCAGTGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTTCAGTTTACAATTCCTGGTGGACGACATGCCACACACCATGCTAGCCTCATGCAGAGCTTGGGAGCACCAAGAGTTCTGCGTGGTGCAGCCGCAGCAGCAACTGCCCCACTCGAAGCAAAAATCTTCGCCAGAATTGTTCTTCGCAATCTTGAGTATCACCAGATAGAGCAATCGCTACTGTAG 2721 0.4572 MNRRVRRKVARKNKGNVVQSSFPEVQDEVLDLEHQRQGVVDWKCLPDDTVIQLLSCLSYRDRASLSSTCKTWRSLGSSPCLWTSLDLRSHRFDGSMASSLAPRCVHLQKLRFRGAESADAIIHLRARNLRELSGDYCRKITDATLSVIVARHELLESLQLGPDFCERISSDAIKAIAHCCPKLNKLRLSGIRDVNADAINALAKHCPKLSDIGFIDCLNVDEVALGNVLSVCFLSVAGTSSMKWGVVSHLWHKLPNLIGLDVSRTDIGPSAVFRMLSLSQNLRVLIALNCSALEEDTSFSASKYKNKLLISLRTDIFKGLASLFFDNTRSGKNVFLDWRTLKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDGFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLARSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQACANASPGLQERAAGALWGLSVSETNSVAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNASNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGRMDEYALVGTSSESVSKSVSLDGARRMALKHIEAFVLMFSDPQAFAAAAASSAPAALALVTKGACIQEAGHLRCSGAEIGRFITMLRNPSSILKACAAFALLQFTIPGGRHATHHASLMQSLGAPRVLRGAAAAATAPLEAKIFARIVLRNLEYHQIEQSLL 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0441 906 ProSiteProfiles F-box domain profile. 39 85 IPR001810 GO:0005515
Aed3g0441 906 SMART LRR_CC_2 180 205 IPR006553 -
Aed3g0441 906 SMART LRR_CC_2 126 151 IPR006553 -
Aed3g0441 906 SMART LRR_CC_2 206 231 IPR006553 -
Aed3g0441 906 Gene3D Ribonuclease Inhibitor 35 317 IPR032675 -
Aed3g0441 906 Pfam F-box-like 43 88 IPR001810 GO:0005515
Aed3g0441 906 SMART fbox_2 45 85 IPR001810 GO:0005515
Aed3g0441 906 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 471 513 IPR000225 GO:0005515
Aed3g0441 906 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 512 557 IPR000225 GO:0005515
Aed3g0441 906 SUPERFAMILY RNI-like 42 295 - -
Aed3g0441 906 Gene3D - 560 750 IPR011989 -
Aed3g0441 906 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 587 629 IPR000225 GO:0005515
Aed3g0441 906 PANTHER PROTEIN ARABIDILLO 1 1 891 IPR044583 -
Aed3g0441 906 Gene3D - 484 559 IPR011989 -
Aed3g0441 906 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 472 IPR000225 GO:0005515
Aed3g0441 906 Gene3D - 378 483 IPR011989 -
Aed3g0441 906 Pfam Armadillo/beta-catenin-like repeat 465 499 IPR000225 GO:0005515
Aed3g0441 906 Pfam Armadillo/beta-catenin-like repeat 502 544 IPR000225 GO:0005515
Aed3g0441 906 Pfam Armadillo/beta-catenin-like repeat 582 615 IPR000225 GO:0005515
Aed3g0441 906 Pfam Armadillo/beta-catenin-like repeat 664 700 IPR000225 GO:0005515
Aed3g0441 906 Pfam Armadillo/beta-catenin-like repeat 617 659 IPR000225 GO:0005515
Aed3g0441 906 SUPERFAMILY ARM repeat 382 732 IPR016024 -
Aed3g0441 906 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 672 714 IPR000225 GO:0005515
Aed3g0441 906 SMART arm_5 460 500 IPR000225 GO:0005515
Aed3g0441 906 SMART arm_5 419 459 IPR000225 GO:0005515
Aed3g0441 906 SMART arm_5 702 743 IPR000225 GO:0005515
Aed3g0441 906 SMART arm_5 576 616 IPR000225 GO:0005515
Aed3g0441 906 SMART arm_5 617 660 IPR000225 GO:0005515
Aed3g0441 906 SMART arm_5 501 544 IPR000225 GO:0005515
Aed3g0441 906 SMART arm_5 661 701 IPR000225 GO:0005515
Aed3g0441 906 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 628 673 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0441 620 854 U-box Gene Family AT2G23140 27.426 6.44e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0441 - - gmx:100819086 1580.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0441 3 3136856 3144628 Aed3g0441 3 3136856 3144628 ECH