Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0421 ATGGCAGGTGGAAGTCTAACAAGTAAGGTGACCTTTATTTTCTTGGCTGCTTTTGCCTTTACTATTCCATGCCTTGAGGCGGGCATTGGCGAGTTTGACGAATTTCTCAAAAAACAAGCTTCCGAGGCCCAAGAAATTGCTCTTAAAAGCTACGAGCCTGACCCTGTCAACATTACTTCCGAGTTCAATATTCATGTTCATGCGGCATTGGGGGAGGCATCAAAGGAGGAAGCAAACAACACAAGGAGGGAACTAAAGCAAAAGAGCAAGTACCGCGGGCCATGCTTGGCCACGAACCCAATAGATCGTTGTTGGAGGTGTGACAAAGATTGGGCACAAAACCGTTTTAAGTTAGCCGATTGTGGCAAGGGCTTCGGAAGAAGGGCAACGGGGGGAAAAGGCGGCAAAATCTACGTCGTCACCGATTCCTCCGACGATGACCCGATCAACGCTAAGCCCGGGACTCTTAGGTACGGTGTCACGCAGAAGGCGCCACTGTGGATCACTTTCGCGCGTAGCATGTCCATCAAACTCAAGTTCGAGTTGCTGATCGGCTCCGATAAGACCATCGACGGCCGCGGTGTCAACGTCGTCATCAAGGACGGCGCCGGCCTCGCCATGCAGTTTGTCAACAACATTATTATTCACGGCATTCGCATCCGCAAGATCAAGGGCGTGGAAGGTGGCATGATTAGGGACAGTGTGATGGGGATGCTATCTCCATTTTTGGTTCTTCCAACATTTGGATCGATCATATCTCCCTCTCTGATTGCGAGGATGATTACGGTGGCATTCAACCACTTTGGGCAGGGGCTGATCCAGAGAATGCCGAGGTGCAGATGGGGGTTTGTCCATGTGGTAAACAACGACTACACACACTGGCTGATTTCAGCGCCGACTATACTGAGCCAGGGAAACCGGTTCATTGCGCCGAACAACGACGCGGCGAAGGAAGTGACACACAGGGACTATGCGTCACCTGAGGAGTGGGGGAAATGGCAGTGGAGATCGGAGAACGATCACTTCATGAATGGGGCTACGTTTCATGAGTCAGGAGGGCCTCTTGGTAAGCTTCCATTCAACAAGGGGCTCCTAATGAACCCTAGACCTGGGACACAAGCCAGCAGGCTCACACGCTTTGCTGGCTCCCTCAATTGCAAGCCTGGTAAACCTTGCTAG 1179 0.5174 MAGGSLTSKVTFIFLAAFAFTIPCLEAGIGEFDEFLKKQASEAQEIALKSYEPDPVNITSEFNIHVHAALGEASKEEANNTRRELKQKSKYRGPCLATNPIDRCWRCDKDWAQNRFKLADCGKGFGRRATGGKGGKIYVVTDSSDDDPINAKPGTLRYGVTQKAPLWITFARSMSIKLKFELLIGSDKTIDGRGVNVVIKDGAGLAMQFVNNIIIHGIRIRKIKGVEGGMIRDSVMGMLSPFLVLPTFGSIISPSLIARMITVAFNHFGQGLIQRMPRCRWGFVHVVNNDYTHWLISAPTILSQGNRFIAPNNDAAKEVTHRDYASPEEWGKWQWRSENDHFMNGATFHESGGPLGKLPFNKGLLMNPRPGTQASRLTRFAGSLNCKPGKPC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0421 392 SMART amb_all 173 314 IPR002022 -
Aed3g0421 392 Gene3D - 98 236 IPR012334 -
Aed3g0421 392 Gene3D - 253 385 IPR012334 -
Aed3g0421 392 PANTHER PECTATE LYASE 7 235 - -
Aed3g0421 392 PANTHER PECTATE LYASE 261 392 - -
Aed3g0421 392 Coils Coil 68 88 - -
Aed3g0421 392 PANTHER PECTATE LYASE 18-RELATED 261 392 IPR045032 GO:0030570
Aed3g0421 392 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Aed3g0421 392 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Aed3g0421 392 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Aed3g0421 392 PANTHER PECTATE LYASE 18-RELATED 7 235 IPR045032 GO:0030570
Aed3g0421 392 Pfam Pectate lyase, N terminus 29 85 IPR007524 GO:0030570
Aed3g0421 392 SUPERFAMILY Pectin lyase-like 119 392 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0421 Aed-Chr3 2998769 3001437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0421 8 392 Polysaccharide Lyase AT5G15110 44.017 9.41e-127 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0421 K01728 - gmx:100780236 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0421 3 2998769 3001437 Aed10g1021 10 8958239 8960135 ECH
Aed3g0421 3 2998769 3001437 Aed3g0421 3 2998769 3001437 ECH