Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0420 ATGGCAATGATGAAAGATAATATTATTGAAGTGAGCCTTGGAAGGAGCCAAATGTCCATGGCAGAAGGTGAGTTCCAAGGAACACGAGGTGTCAAGAGACGACGAAGAGAGGTTGGTGCTGCAGCAGCAGCAGCAAGAAGTGGTGATGATAACCACCAGCAGCAGCAGTTACCACAGCAAGAAGTTGGTGAAAATACTACAATCAACACTACAAAGAGAAGCTCAAGATTTCGCGGTGTTAGCAGACATAGATGGACTGGTCGATATGAAGCACACTTGTGGGACAAACTCTCTTGGAACATAACACAGAAGAAGAAAGGGAAGCAAGGGGCTTATGATGAAGAAGAATCTGCTGCCAGAGCATATGATTTAGCTGCACTAAAGTATTGGGGAACTTCAACTTTCACCAATTTTCCAATACCAGATTATGAGAAAGAGATAGAAATAATGCAGACTATGACCAAAGAGGAGTATTTGGCCACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGTGTATCGAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCAAGAATAGGAAGGGTTTTTGGAAACAAATATCTCTACCTTGGCACCTACAGCACACAAGAGGAAGCTGCGCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGAATTCATGCTGTAACAAACTTTGATTTGAGCACTTACATAAAATGGTTAAAGCCTTCAGGAGGAAGCACTCCAGAAGAAAAACATGAATCACATGCAGTACTAGAGCAACAAAAGGTGGCATCCCTATCTAACTATGGTCTAACAGAAGAAGAGTCAAAGTCTTTGGCCCTTCACAACAGTTTTTTCAGTCCAGATTCTTTGGATTCCCCTGTCAAGCATGAAAGTTTTGGAAACAAAACCTACCAATTCTCAAGAAGTAAGTCATCTTCTCCCACTGCACTTGGCCTCCTTCTCCGCTCTTCGCTATTTAGAGAATTAGTTGAAAAGAATTCAAATGTTTATGGAGATGAAGCTGATGGGGAAGTCACAAAAGATCAACAGCCACAAATAGCTAGTGATGATGATCTGGGTGGAATCTTCTTTGACAGCATTAGTGATATTCCATTTGTGTATGATCCCAATAGATACAACTTGGAATTACAAGAAAGAGACCTGCACTCAATATTTTGA 1185 0.4186 MAMMKDNIIEVSLGRSQMSMAEGEFQGTRGVKRRRREVGAAAAAARSGDDNHQQQQLPQQEVGENTTINTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPIPDYEKEIEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIKWLKPSGGSTPEEKHESHAVLEQQKVASLSNYGLTEEESKSLALHNSFFSPDSLDSPVKHESFGNKTYQFSRSKSSSPTALGLLLRSSLFRELVEKNSNVYGDEADGEVTKDQQPQIASDDDLGGIFFDSISDIPFVYDPNRYNLELQERDLHSIF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0420 394 ProSiteProfiles AP2/ERF domain profile. 175 233 IPR001471 GO:0003700|GO:0006355
Aed3g0420 394 ProSiteProfiles AP2/ERF domain profile. 76 139 IPR001471 GO:0003700|GO:0006355
Aed3g0420 394 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Aed3g0420 394 PRINTS Ethylene responsive element binding protein signature 215 235 IPR001471 GO:0003700|GO:0006355
Aed3g0420 394 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 370 - -
Aed3g0420 394 SUPERFAMILY DNA-binding domain 75 140 IPR016177 GO:0003677
Aed3g0420 394 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 370 - -
Aed3g0420 394 SUPERFAMILY DNA-binding domain 174 235 IPR016177 GO:0003677
Aed3g0420 394 CDD AP2 174 235 IPR001471 GO:0003700|GO:0006355
Aed3g0420 394 Gene3D AP2/ERF domain 75 140 IPR036955 GO:0003700|GO:0006355
Aed3g0420 394 Gene3D AP2/ERF domain 174 235 IPR036955 GO:0003700|GO:0006355
Aed3g0420 394 SMART rav1_2 175 239 IPR001471 GO:0003700|GO:0006355
Aed3g0420 394 SMART rav1_2 76 145 IPR001471 GO:0003700|GO:0006355
Aed3g0420 394 CDD AP2 75 140 IPR001471 GO:0003700|GO:0006355
Aed3g0420 394 MobiDBLite consensus disorder prediction 48 75 - -
Aed3g0420 394 MobiDBLite consensus disorder prediction 40 75 - -
Aed3g0420 394 Pfam AP2 domain 75 131 IPR001471 GO:0003700|GO:0006355
Aed3g0420 394 Pfam AP2 domain 174 225 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0420 Aed-Chr3 2994383 2996560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0420 72 287 AP2-EREBP Transcription Factor Family AT5G57390 56.332 5.22e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Aed3g0420 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0420 - - gmx:100779867 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0420 3 2994383 2996560 Aed3g0420 3 2994383 2996560 ECH