Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0415 ATGTGTGTGAGATTGAGGGTGCTCTACCAGATTGAGGCCATCACAAAAATGTCTAGTCCTACTGGTCCAGAGATAGAAGAGAAGAGAGTCACAAAGGAAGATAAATTCAAATCTGCTAAAACTGAGATGGGTGAGGTGAAGGAAGAAAATGAGAGATTGAAGATGATGCTGGAAAGAGTAGAAAAGGACTACCACTCCCTTCAACTCCGTTTCTTTGACATACTTCACAAAGATGATTCAAAGAAGGGTACTGTACATGTAGCCGATTCATCTACTTCCCATGATCATCATGAAAGTGAAGAGCCTGAGCTTGTGTCACTTTGCCTTGGAAGGAATCCAAGGGAGCCTAAGAAGGAACAAATAATTGGAGACTCCAACAAACCAAAAGAAGAAGATATTGGACCCAACCTTACACTTGGATTAGACTCCAAACACCTTTTGTCAATGGAGAATGTGTCTGATTTGAGTCCTTTGAGCTCAGAAGAACCAAAGGAAGTTGAATCAGCAGAGGGAACATTATTGCCAACAAATCAATCGGCAAAAGTGATAAATGTAAATGATGACGACATTTCAGATCAAATGCCAGCCAAGAGAGCTAGGGTATCTGTGAGAGCAAGATGTGATACTCCCACGATGAATGATGGGTGCCAATGGAGGAAATATGGACAGAAGATAGCAAAGGGAAATCCATGTCCAAGAGCATACTATCGTTGCACAGTTTCACCAAATTGCCCTGTGAGGAAGCAGGTGCAAAGGTGTGCTGAGGACATGTCCACCTTAATTACCACATATGAAGGAACCCACAACCACCCACTTCCGGTTTCAGCCACAGCCATGGCTTCAACCACTTCAGCTGCTGCTTCCATGCTGTTGTCAGGTTCTTCAACATCTCACAATTCTGCATTATCTTTTGGAAATGCTCCTACCACACTACTCAATGGTCTGAGTTTCAGTACTCACCAGTTTGATGAATCAAGAGCCAAACAAGTCTTCTTCTCACAACCAAACCATGTCTCACCAAATAATATGTTCCCAACAATCACTCTAGACATGACTTCTTCAGCTTCTCAATTCAATCATCGCTTACCTTCAACCAATATTGCTTCAATTTCAAACACAAAATTTTCTCCAGCTAGGTCCGCAGTTATCAAGGGAAATCAATATTTCCAAGAAAGTTTCTACCAACAAAGCATAACAAACCAAACTCCCTCCAAAGAAGCTTTGGCAGAAACAATAACCAAAGCAATCAGCACAGACCCAAGTCTTCGTTCAGTAATAGCTGCTGCAGTTTCTTCAATAGTGGGGCATGGATCAAACAGTGGGAACCAAGGGGGAGCAGAGAATGTTCTTGGTTCAGGATTGAACTTAAAACTTGGGGAGCATCTTCAATTGGCTTCACCAAATCCCTTGAACCAAAATGGGAAAGGGTGCTTAACAGGCTACTTCAAAAGTTTGTCCTCTAAGAGTTCCGAGGCTGCAGGAAACTTCATTTTTCTCCAACCACCATTGGGATTTTCTTTCTCCAAGAGTAGCACAAATCAGGTCAACCATTATGTTCCAGAAATGAACACACATCATTAG 1581 0.4219 MCVRLRVLYQIEAITKMSSPTGPEIEEKRVTKEDKFKSAKTEMGEVKEENERLKMMLERVEKDYHSLQLRFFDILHKDDSKKGTVHVADSSTSHDHHESEEPELVSLCLGRNPREPKKEQIIGDSNKPKEEDIGPNLTLGLDSKHLLSMENVSDLSPLSSEEPKEVESAEGTLLPTNQSAKVINVNDDDISDQMPAKRARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVSPNCPVRKQVQRCAEDMSTLITTYEGTHNHPLPVSATAMASTTSAAASMLLSGSSTSHNSALSFGNAPTTLLNGLSFSTHQFDESRAKQVFFSQPNHVSPNNMFPTITLDMTSSASQFNHRLPSTNIASISNTKFSPARSAVIKGNQYFQESFYQQSITNQTPSKEALAETITKAISTDPSLRSVIAAAVSSIVGHGSNSGNQGGAENVLGSGLNLKLGEHLQLASPNPLNQNGKGCLTGYFKSLSSKSSEAAGNFIFLQPPLGFSFSKSSTNQVNHYVPEMNTHH 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0415 526 SUPERFAMILY WRKY DNA-binding domain 205 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed3g0415 526 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 35 515 IPR044810 GO:0003700
Aed3g0415 526 ProSiteProfiles WRKY domain profile. 207 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed3g0415 526 Pfam WRKY DNA -binding domain 213 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed3g0415 526 MobiDBLite consensus disorder prediction 112 131 - -
Aed3g0415 526 Gene3D WRKY domain 197 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed3g0415 526 MobiDBLite consensus disorder prediction 84 139 - -
Aed3g0415 526 SMART WRKY_cls 212 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed3g0415 526 MobiDBLite consensus disorder prediction 84 104 - -
Aed3g0415 526 Coils Coil 36 70 - -
Aed3g0415 526 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 35 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0415 Aed-Chr3 2962195 2964595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0415 43 485 WRKY Transcription Factor Family AT5G15130 42.510 8.90e-85 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed3g0415 WRKY 3.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0415 - - gmx:100780402 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0415 3 2962195 2964595 Aed10g1022 10 8973453 8977933 ECH
Aed3g0415 3 2962195 2964595 Aed6g1552 6 19646721 19650871 ECH
Aed3g0415 3 2962195 2964595 Aed3g0415 3 2962195 2964595 ECH
Aed11g0320 11 2589173 2594924 Aed3g0415 3 2962195 2964595 ECH