Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0402 ATGGCCTTTCCACCACCTTCTCACAGCAGCTTCACATTTAATACTACTCATGAAGAAGATCACAACGCCTTCCCCTCTTTCCCACCCCAACTCTTTCAAGGAGGTGCACCTTTCATGTTGAAGCGGTCCATGTCATTTTCAGGCATCGAGAACAAGTGTGATGAAGTGCACGCAGGAGAAGATGAGTTATCGGATGATGGGATGGTCTTCCAGTACTGTGGGGAGAAGAAGAAGAGGTTGAATTTGGAACAGGTGAAGGGTCTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGGAAACTGCAACTAGCTAAGGCTTTGGGGATGCAGCCAAGACAAGTTGCCATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCACTTGGAGAAGGAATATCAACTTCTCAAGAAGCAGTTTGAGGCACTTAATGCTGATAATGACGTTCTTAAGCTTCAGAATCAGAAACTGCAGGCAGAGTTACAAGCTGTTAAAAGTAGGGATTGGTGTGAGGCTGGAATGATGAGCCTTAAGAAAGAAACTGAGGGTTCTTGGAGCAACGGAAGTGATAATGATAACAGCTCAGATATAAATTTAAATCTTTCAAGGACACTAGGTTTGAACAATTCTATATCTACTGATCAGATCGGTAAAAACCTACAACTACAACCCAATTCGGTAAAGTCCACCAGCATAACACAGCTCCTTCAAGATGATGGCTTCTGCAACATGTTTCACAACATTGATGCACAACAGAACTTTTGGCCCTGGCCTGATCAACAGCACCAGCGTTTCCATTGA 813 0.4391 MAFPPPSHSSFTFNTTHEEDHNAFPSFPPQLFQGGAPFMLKRSMSFSGIENKCDEVHAGEDELSDDGMVFQYCGEKKKRLNLEQVKGLEKSFELGNKLEPERKLQLAKALGMQPRQVAIWFQNRRARWKTKHLEKEYQLLKKQFEALNADNDVLKLQNQKLQAELQAVKSRDWCEAGMMSLKKETEGSWSNGSDNDNSSDINLNLSRTLGLNNSISTDQIGKNLQLQPNSVKSTSITQLLQDDGFCNMFHNIDAQQNFWPWPDQQHQRFH 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0402 270 CDD homeodomain 76 132 IPR001356 GO:0003677
Aed3g0402 270 Coils Coil 123 171 - -
Aed3g0402 270 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Aed3g0402 270 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 19 270 - -
Aed3g0402 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 19 270 IPR045224 GO:0003700
Aed3g0402 270 Gene3D - 75 137 - -
Aed3g0402 270 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Aed3g0402 270 MobiDBLite consensus disorder prediction 1 23 - -
Aed3g0402 270 Pfam Homeobox associated leucine zipper 131 170 IPR003106 GO:0006355|GO:0043565
Aed3g0402 270 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Aed3g0402 270 MobiDBLite consensus disorder prediction 7 21 - -
Aed3g0402 270 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Aed3g0402 270 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Aed3g0402 270 SUPERFAMILY Homeodomain-like 73 132 IPR009057 -
Aed3g0402 270 SMART HOX_1 74 135 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0402 Aed-Chr3 2892151 2894475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0402 1 263 Homeobox Transcription Factor Family AT3G01220 48.718 5.43e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed3g0402 Homeodomain 6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0402 K09338 - gmx:100797920 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0402 3 2892151 2894475 Aed3g0402 3 2892151 2894475 ECH
Aed9g2146 9 24793945 24796950 Aed3g0402 3 2892151 2894475 PCT