Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0399 ATGTCTAGCAGAAGATCCTCCAGACAACATTCAGGGTCTACAAGGATCTCCGATGACCAAATCATCGATCTTGTTTCTAAATTGCGCCAACTTGTTCCCGAGATTCGCAATAGGCGATCTGACAAGGTTTCAGCGTCGAAGGTCCTACAAGAGACCTGCAACTACATCAGAAGCTTGCACAGAGAGGTGAGTGATTTGAGTGAGAGACTGTCTCAGTTGTTGACCACAATTGATGCTGATAGTGCTGAAGCTGGAATCATTAGGAGCCTACTTAATCAATAA 282 0.4468 MSSRRSSRQHSGSTRISDDQIIDLVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIRSLHREVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0399 93 PANTHER TRANSCRIPTION REGULATOR 1 91 - -
Aed3g0399 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Aed3g0399 93 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Aed3g0399 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Aed3g0399 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Aed3g0399 93 Coils Coil 56 76 - -
Aed3g0399 93 Gene3D - 2 84 IPR036638 GO:0046983
Aed3g0399 93 CDD bHLH_AtPRE_like 15 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0399 Aed-Chr3 2866807 2868188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0399 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 73.750 6.22e-36 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed3g0399 HLH 2.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0399 - - gmx:100796852 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0399 3 2866807 2868188 Aed10g1026 10 9028782 9030646 ECH
Aed3g0399 3 2866807 2868188 Aed3g0399 3 2866807 2868188 ECH
Aed11g0332 11 2715677 2717155 Aed3g0399 3 2866807 2868188 ECH
Aed9g2144 9 24744985 24747448 Aed3g0399 3 2866807 2868188 PCT