Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0396 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGGGTTAAGAAAGGGCCTTGGACTCCTGAAGAAGACATCATTTTGGTGTCTTATATTCAGGAAAATGGTCCTGGAAATTGGAGGGCAGTTCCTAACAAAACAGGGTTGTCAAGGTGCAGTAAGAGTTGCAGACTTAGATGGACGAATTACCTGAGGCCAGGAATCAAACGGGGCAACTTCACAGAACAAGAGGAGAAGATGATAATCCATCTTCAAGATCTTTTAGGAAACAGATGGGCTGCAATAGCTTCATACCTTCCACAGAGAACAGACAATGACATAAAAAACTATTGGAACACCCATCTGAGAAAGAAGCTGAAGAAGATGCAAACAGGTAGTGAAGGTGAGTTGGGAGAATCAGGGTTTTCAGGCTCAAGGCAAATCCCTAGAGGGCAGTGGGAAAGAAGGCTCCAAACTGATATCCAAATGGCAAAGAGAGCTCTCAGTGAAGCTCTTTCACCAGATCAGAAGCCATCTTGTTTATCTGCCTCAAACTCAAACCCTTCAGACAGTAGCAGCTCCTTCTCTTCCACAAAACCAACACAATCTGTGTGCTATGCTTCAAGTGCTGAGAACATAGCTCGCATGCTGAAGGGTTGGATGAAAAACCCACCAAAGTCCTCAAGAACCAACTCATCAGTGACTCAGAACTCCTTCAACAACTTAGCTGCAGCAGGAGCTGATACTGCCTCTAGTGGAGCCAAGGGACCACTAAGCAGTGCCGAATTAATGTCTGAGAATTTTGAATCCTTGTTTGATTTTGATCAGTCTTTGGAGTCTTCAAACTCTGATCAATTCTCTCAGTCCTTGTCTCCTGAGGCCACTGTTTTGCAAGATGAAAGCAAGCCTTATATTGGTGCAGAAATCATGCCATTCTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTGGTTGCCAAGACAAAATTGGTTGTGGTACTGATGCCAAGTTTTTCTAA 987 0.4407 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQENGPGNWRAVPNKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKMQTGSEGELGESGFSGSRQIPRGQWERRLQTDIQMAKRALSEALSPDQKPSCLSASNSNPSDSSSSFSSTKPTQSVCYASSAENIARMLKGWMKNPPKSSRTNSSVTQNSFNNLAAAGADTASSGAKGPLSSAELMSENFESLFDFDQSLESSNSDQFSQSLSPEATVLQDESKPYIGAEIMPFSLLEKWLLDEAGCQDKIGCGTDAKFF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0396 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aed3g0396 328 CDD SANT 69 112 IPR001005 -
Aed3g0396 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed3g0396 328 CDD SANT 16 61 IPR001005 -
Aed3g0396 328 SMART sant 13 63 IPR001005 -
Aed3g0396 328 SMART sant 66 114 IPR001005 -
Aed3g0396 328 MobiDBLite consensus disorder prediction 158 191 - -
Aed3g0396 328 Gene3D - 68 129 - -
Aed3g0396 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aed3g0396 328 Gene3D - 13 66 - -
Aed3g0396 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 322 - -
Aed3g0396 328 MobiDBLite consensus disorder prediction 119 141 - -
Aed3g0396 328 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 322 - -
Aed3g0396 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed3g0396 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed3g0396 328 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aed3g0396 328 MobiDBLite consensus disorder prediction 165 191 - -
Aed3g0396 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0396 Aed-Chr3 2820369 2822966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0396 1 312 MYB Transcription Factor Family AT5G62470 52.738 1.93e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g0396 Myb_DNA-binding 4.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0396 K09422 - gmx:780543 545.428