Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0395 ATGGACATAACCCCAACAACAACGATCAACAACAACGCTACTCCCAGTGCAACAACAACAACAAAATCCCCAGAGCATGACACAGAAACACCGACCAGGATCACCACCCCCATCACTCCCACAACGACAAAAACCTTATCTTTCTCGAACGGTGTTCTCAAACGCCACCACCACAACCACCACCACCACCCCATCCCTGCGGTGGTTACCTACAAAGAATGCCTTAAAAACCACGCAGCCAACTTGGGTGGCCACGCTTTAGACGGTTGCGGCGAGTTCATGCCTTCGCCGACCGCCACCGCCGCAGACCCCAGCTCCATAAAATGTGCCGCCTGCGGCTGCCACCGAAACTTCCACCGCCGCGAGCCTGAGGAGCCCCCCATCGCCTCCACCACCACGCATGTCATCGAGTATCAGTCTCACCGCCGCCACCACCCTCCGCCGCCGCTCCACGCGGCAGCGGCTCGCAGCCCTAATTCCGCGTCTCCGCCGCCGATCTCCTCCTCGTACTACCCCTCCGCGCCGCACATGCTCCTCGCCCTCTCCGCCGGCCTGGCGGCTCCGCCTGAAAACACCGCCGCACCCTCCGCACTCACCAGAAAACGCTTCAGAACTAAGTTCAGTCAGGAGCAGAAGGAGAAGATGCAGAATAATCTTGTTTTGGTTGGGGTGGGACCCACCCCTGGCATTGGTGCTGCTAACCAGCAAGTCATGGGCTGGTTCTGGACCCCTTAA 735 0.5932 MDITPTTTINNNATPSATTTTKSPEHDTETPTRITTPITPTTTKTLSFSNGVLKRHHHNHHHHPIPAVVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPEEPPIASTTTHVIEYQSHRRHHPPPPLHAAAARSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPENTAAPSALTRKRFRTKFSQEQKEKMQNNLVLVGVGPTPGIGAANQQVMGWFWTP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0395 244 MobiDBLite consensus disorder prediction 140 168 - -
Aed3g0395 244 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 70 122 IPR006456 -
Aed3g0395 244 Pfam ZF-HD protein dimerisation region 69 123 IPR006456 -
Aed3g0395 244 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 217 - -
Aed3g0395 244 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 217 - -
Aed3g0395 244 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 122 IPR006456 -
Aed3g0395 244 MobiDBLite consensus disorder prediction 1 45 - -
Aed3g0395 244 Gene3D - 189 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0395 Aed-Chr3 2798664 2800948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0395 17 215 ZF-HD Transcription Factor Family AT5G15210 55.224 2.93e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aed3g0395 ZF-HD_dimer 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0395 - - gmx:100789447 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g2137 9 24577871 24578899 Aed3g0395 3 2798664 2800948 PCT