Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0376 ATGTTGCATTTATGTAGGAAAATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTACATGGTAACACATGTCAAAGGGTATGGTTTTGGAGGTTGGACCAATGCACATGCCACTTTCTATGGAGGAGGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAATCTGTATAGCCAAGGTTATGGAACTGATACAACAGCACTGAGCACTGCACTGTTCAACAATGGTTTGAGCTGTGGTGCATGCTTTCAAATTAAATGCGTGAATGACCCACAATGGTGCCTTCCTGGCTCCATCATTGTCACTGCCACAAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCGAATCACCACTTTGATCTCTCTCAACCTGTTTTCCAGCACATTGCTCAATATAGGGCTGGAATTGTGCCTGTAGTTTACAGAAGGGTGAGGTGCAGTAGAAAAGGTGGAATAAGGTTCACCATCAATGGACACTCATACTTCAATTTAGTCCTTGTGACCAATGTTGGAGGTGCAGGTGATGTGCATTCAGTGTCCATCAAAGGGTCAAGAACAAGATGGCAAGCCATGTCAAGGAACTGGGGGCAAAACTGGCAAAGCAACTCATACTTGAATGGTCAGAGTCTTTCATTTGTAGTCACCACCAGCAATGGACACAGTGTGGTGTCATACAATGCTGCCCCATCTGGTTGGTCCTTTGGCCAGACCTACACTGGAAGGCAGTTCAATTACTAA 747 0.4578 MLHLCRKMALLGFLLGLFYMVTHVKGYGFGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFQIKCVNDPQWCLPGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVVYRRVRCSRKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNAAPSGWSFGQTYTGRQFNY 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0376 248 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Aed3g0376 248 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Aed3g0376 248 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Aed3g0376 248 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Aed3g0376 248 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Aed3g0376 248 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Aed3g0376 248 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Aed3g0376 248 PANTHER EXPANSIN-A15 9 247 IPR002963 GO:0009664
Aed3g0376 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 154 IPR007112 -
Aed3g0376 248 PANTHER EXPANSIN 9 247 - -
Aed3g0376 248 Pfam Lytic transglycolase 67 144 IPR009009 -
Aed3g0376 248 Gene3D - 22 150 IPR036908 -
Aed3g0376 248 SMART dpbb_1 67 144 IPR007112 -
Aed3g0376 248 SUPERFAMILY Barwin-like endoglucanases 31 172 IPR036908 -
Aed3g0376 248 Gene3D - 153 246 IPR036749 -
Aed3g0376 248 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Aed3g0376 248 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Aed3g0376 248 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Aed3g0376 248 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Aed3g0376 248 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Aed3g0376 248 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Aed3g0376 248 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Aed3g0376 248 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Aed3g0376 248 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
Aed3g0376 248 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Aed3g0376 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0376 Aed-Chr3 2674870 2676765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0376 7 246 Expansin Gene Family AT2G03090 77.510 1.87e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0376 K20628 - gmx:100790170 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0376 3 2674870 2676765 Aed6g1585 6 19861531 19863648 ECH
Aed3g0376 3 2674870 2676765 Aed3g0376 3 2674870 2676765 ECH
Aed11g0377 11 3196980 3199480 Aed3g0376 3 2674870 2676765 ECH