Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0362 ATGGCAAGGAAGAGAAAAGTTGCTGAAGCAATTGAAGAGAGGAATCCATGTGATGAAACCATGGCATGGGATGAGGTGTTGAAGGAAGCTGCTGAGCTAGGAAGTGCAAGGAGATTGAGGAAGAGATTTGTTGGGGTGAGACAAAGACCATCAGGAAGATGGGTAGCTGAGATCAAAGACACCATTCAGAAGATAAGAGTGTGGTTAGGAACCTTTGATACAGCAGAAGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGCATTCTTCGCGGCGCCAACACTAGAACAAACTTCTGGCCAAGCTCTCAATCTTCCTCAACTCCTGCTCTTCCCTCAAAGATTACCAATCTCCTCCTTCAAAGGCTTAAAGCGAGGAATAACAATAACAGTAATAATAACAATAACAAGCCTTGTTCTCTTTCTTCTTCTTCTTCTTCCTCCTCCAGTTCTCTTTTCACCAACCACCAACAAAAGCCACAAGCAGATGCATGTGGAACTGAGTCTACACATTTCTCATTGGACCAATTCTCGGATTTCCTTAATGATCCTGAAGATTACAGCACAAGCAACAATGATTTTAGCAATGAAAGTGCACAAATTGATTACATCACAAGTAGTCTTGAATCATGTTTGAATGAAAATGATGATTGCATGGAAATGGAAATTGACTTCAGCAGTGTGACACAAACATCAAGTGCTGATATAAATTCAGGAGGGGAAAGAGAGGAGGAAGAGAGTGAAGAAGGCACTGATTTGAGTATCAAGGATTTTCAGTTCCTGGACAATGTTGTTCCATCCAGTTACTGTTGTTCACCTTTTGAGATCGCTGAAGAGATTGAGGAGCAATTGGAGCCAGAGAACTATGGTGATGAGCCTTCAATGCTGAGAGAAGTCATGAAGAGAATGAAATATGAGAGGAAGTTTTCAGCTTCACTTTATGCCTTCAATGGAATACCTGAGTGCTTGAAGTTGAAACTCGAATCAGAAAACAAAAATGGAAGAGGTGTTTCTATTTCTAATCAACTAACCAACCTCAAGATGGCTTGTAGCAAAAACAAAGATGAGGATAGTAAGAACAATGAAGAATACATGGAAGCAATGGAAAGGAAAGAGGAAGAAAATCCACAAACATCAATTGGCATGGATTGCTCTTTCTCATCCATTATCGATGATGATGATGATGGAGAACTGTTACTTTGGAATTCACTTGATCTTCCTACTATTTGCTTTGTTAACTAG 1239 0.4044 MARKRKVAEAIEERNPCDETMAWDEVLKEAAELGSARRLRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACILRGANTRTNFWPSSQSSSTPALPSKITNLLLQRLKARNNNNSNNNNNKPCSLSSSSSSSSSSLFTNHQQKPQADACGTESTHFSLDQFSDFLNDPEDYSTSNNDFSNESAQIDYITSSLESCLNENDDCMEMEIDFSSVTQTSSADINSGGEREEEESEEGTDLSIKDFQFLDNVVPSSYCCSPFEIAEEIEEQLEPENYGDEPSMLREVMKRMKYERKFSASLYAFNGIPECLKLKLESENKNGRGVSISNQLTNLKMACSKNKDEDSKNNEEYMEAMERKEEENPQTSIGMDCSFSSIIDDDDDGELLLWNSLDLPTICFVN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0362 412 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Aed3g0362 412 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Aed3g0362 412 Coils Coil 353 373 - -
Aed3g0362 412 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 347 - -
Aed3g0362 412 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Aed3g0362 412 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Aed3g0362 412 MobiDBLite consensus disorder prediction 227 251 - -
Aed3g0362 412 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Aed3g0362 412 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 347 - -
Aed3g0362 412 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Aed3g0362 412 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Aed3g0362 412 MobiDBLite consensus disorder prediction 126 166 - -
Aed3g0362 412 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0362 Aed-Chr3 2542805 2544043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0362 40 118 AP2-EREBP Transcription Factor Family AT5G19790 70.886 1.27e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed3g0362 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0362 K09286 - gmx:100796159 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0362 3 2542805 2544043 Aed3g0362 3 2542805 2544043 ECH