Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0359 ATGGGCTGCGTGAGCTCGAAGAAGACCGTGGCCGTCGCCGGAGGCTCTACTCCGGAGGAGCCGTGCGTGGTGCATTCGAGTTCGCGGAGGCGGATAAGCAGCAATGGGTCGGGGCGAAAGCGAAACGGCGTGGCGGAGGCGCGTGAGGGGGAGGAGGTGAGGAAGGAAAGGAACAGGGGGAGCTTGAGAGGTTCGGTGCCTTTAAGGTTGTCGTCGTCATCGTGTGGCTTTGTGGAGGCTGCTCAGCAGAATGCGGTTGGGTGGCCAACTTGGCTAACCTCTGTTGCCGGGGAAGCCATTCAAGGCTGGCTCCCTCTCAAACTAGACTCTTTTCAGAGATTGGATAAGATTGGACAGGGTACATATAGCACTGTATACAAAGCACGCGAAGTTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTGCGCTTTGACAAATTTCAAGCCGAAAGCATTAGGTTCATGGCAAGAGAGATACTAATTCTCCGCACACTTGACCACCCTAACATCGTGAAATTGGAGGGTATAATCACTTCACCACTATCAAATAGCATATACCTTGTGTTTGAATACATGGAGCATGACCTTGCTGGCCTAGTAGCTTCTCCTGATATAAACTTCACAGACTCACAGATTAAGACTTACATGAAACAGCTATTAAGTGGAATGGAGCATTGTCACCTTCGAGGTATTATGCATCGAGACATTAAAGTATCTAATATATTAGTGAACAATGAAGGTATTCTCAAGATAGCAGATTTTGGGTTAGCCAATACGCTTACCCCAAATAACAAGCAACCCTTAACAAGTCGTGTGGTGACTCTATGGTATCGTCCTCCTGAGCTCTTGATGGGATCAACAACTTATGGAGTTTCTGTGGATCTATGGAGTGTTGGCTGTGTCTTTGCTGAATTTTTTCTGAGGAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTCAAGCTTTGTGGTTCTCCACTTGGGGAGTACTGGAAAACGAATAAGCTTCCTCTGGCCACAGTGTTTAAACCTCGGACTAATTACGAAACCTCTCTTCATGAGAGGTGTAGAGGCTTTCCTGCAACTGCCGTAAACCTACTGGAGACTTTACTTTCCATTGATCCCTCCAAGCGCGGGACTGCCTCCTCTGCACTCATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGCAATCCATCACTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCCAGAAATCGGGAAGATGTGCACAGGAAAATGAATGGAGATAAACTGAGAGAGGCTGTAACATCCAAAAGGCAAAGACGAGTCCAACAAGTTTCCCATGGCCATATCAATTTAAACAAATCAGCTTTGAAAGAGGAAATGCAGAATGTTTCTCAAAATAATGGTAGGGCATGTGTTACAAAAGAAAAAGTAGGAGTTATGCATAAAGAGCAACCAAAGCCTTCATATAATTGCAATGAATACGGTGTATACTCAAGACCGGCACCAGTCTCGGGATCTAGTGGTTTTACTTGGGATAAAAGGAGAAAACCAAAAGTTTCATCCATATTGTCAGATAGCTCAAGAAGCAAAATCAGTGCTCTGGATCCAACCTTTGCAAACAGCACATATGATTTAACAGAACATGGGATAGATGTTTCAGAAAGGAAACATAGTTACAACACAAGCCATCGGGATGAGACTTCCAACTATGTATCACTTAAGTACCAGGCTCCTCGTGTTCAACAAAAATCATTCGATGTAGCTGATACATACAACTCAAATTATTACATGGAGTTTGATTTCACAGATAAAATGGATGCTTTCATTGATTCTCGGGGCCACAGAAAACATGGTGAGCCTGTGGAGCAATCAGTACCAAAAATAATCCCATCAAATGAAAATGATGAGATGTTGCATTGGAATGAAAACAGTATGCGGCAATCTCTTCGTAAATCAAGGTTGGGAAGAGGTAAAGTTACTACTTTCATCTAG 2004 0.4436 MGCVSSKKTVAVAGGSTPEEPCVVHSSSRRRISSNGSGRKRNGVAEAREGEEVRKERNRGSLRGSVPLRLSSSSCGFVEAAQQNAVGWPTWLTSVAGEAIQGWLPLKLDSFQRLDKIGQGTYSTVYKAREVETGRMVALKKVRFDKFQAESIRFMAREILILRTLDHPNIVKLEGIITSPLSNSIYLVFEYMEHDLAGLVASPDINFTDSQIKTYMKQLLSGMEHCHLRGIMHRDIKVSNILVNNEGILKIADFGLANTLTPNNKQPLTSRVVTLWYRPPELLMGSTTYGVSVDLWSVGCVFAEFFLRKPILKGRTEVEQLHKIFKLCGSPLGEYWKTNKLPLATVFKPRTNYETSLHERCRGFPATAVNLLETLLSIDPSKRGTASSALMSEYFSTKPYACNPSLLPKYPPSKEMDARNREDVHRKMNGDKLREAVTSKRQRRVQQVSHGHINLNKSALKEEMQNVSQNNGRACVTKEKVGVMHKEQPKPSYNCNEYGVYSRPAPVSGSSGFTWDKRRKPKVSSILSDSSRSKISALDPTFANSTYDLTEHGIDVSERKHSYNTSHRDETSNYVSLKYQAPRVQQKSFDVADTYNSNYYMEFDFTDKMDAFIDSRGHRKHGEPVEQSVPKIIPSNENDEMLHWNENSMRQSLRKSRLGRGKVTTFI 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0359 667 PANTHER CYCLIN-DEPENDENT KINASE 4 554 - -
Aed3g0359 667 SUPERFAMILY Protein kinase-like (PK-like) 105 400 IPR011009 -
Aed3g0359 667 SMART serkin_6 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0359 667 MobiDBLite consensus disorder prediction 1 60 - -
Aed3g0359 667 CDD STKc_CDK9_like 111 395 - -
Aed3g0359 667 Pfam Protein kinase domain 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0359 667 MobiDBLite consensus disorder prediction 21 40 - -
Aed3g0359 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Aed3g0359 667 Gene3D Phosphorylase Kinase; domain 1 98 193 - -
Aed3g0359 667 ProSiteProfiles Protein kinase domain profile. 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0359 667 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Aed3g0359 667 Gene3D Transferase(Phosphotransferase) domain 1 194 434 - -
Aed3g0359 667 PANTHER CELL DIVISION PROTEIN KINASE 4 554 - -
Aed3g0359 667 MobiDBLite consensus disorder prediction 42 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0359 Aed-Chr3 2511429 2514788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0359 103 451 Core Cell Cycle Gene Families AT5G10270 44.687 1.35e-103 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed3g0359 Pkinase 2.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0359 - - gmx:100781059 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0359 3 2511429 2514788 Aed3g0359 3 2511429 2514788 ECH
Aed3g0359 3 2511429 2514788 Aed3g0922 3 6749093 6754395 ECH