Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0349 ATGGGGTTGAAATTAATAAAGCAGGGACCCCCCAAAGTTGAGGATCTAAGTTTACATCATCAAATGATCAGTTACCTTACCAAGAATTTTATTCGTAACTTGGTATCTAAGCAACGAAGAAGAATGCTTATTGACGGTTATGATCTTGACATGTCATATATCACCGAGCGAGTATTAGCAATGTCATTTCCTGCACAACGTATGCGAGCAATGTATAGAAATCCTCTCTGGCAAATCTATAATCTCTGTATAGAAGAAAGTTATGATCCAGATAACTTCTATGGACGTGTGGAAGCATACCCCTTTGATGATAACCATGTTCCATCTCTTGAAATGATCAAAGCTTTCTGTGAAAGTGTGGATTCGTGGCTGGCAAGTGACCCAAAAAACATTGCTGTTATTCATTGCATGGCAGGAAAAGGTAGAACTGGATTAATGGTGAGTGCATACCTTACTTATTGCGGCATGTCAGCAGATGAGGCTCTCCAATTGTATGCAGATAGACGAACAACAAATAATGAAGGAGTATCAATACCAAGCCAACGTCGTTACGTGGGATACTGGGATAGTTTACTTTCAAGTTCCGTCCCAAGGGTAACTGGAAATGAACCAACAAAAGTGACCTTGCCTCAACCATGTAGCAGAGAATTGCGGCGGATCCGGCTTTATGATACAACCAACATTGGCACAATATTCTTTGTTATCTCAGAGCTACACGAGATTCCTAATGAGGTGTATCGTCCATCAGTGGAAGCTTCCCGTGGTTGTTGTAGACAGATAAAGAAAGGGTATCAGAGAAACAATAGCCCTCGCTATTATATCTCTATTCTGGAAGAAGATGATAAAGATGGAAAGCACTCAGAAACAGAAGAACCTCGCATTGTAGTTCAAATGGACACAGAGACTTCAGCAATATACCAAAAATCATGTTTGGACCATTATTTTGATAAACCTATCCGAGTAACTGGAGATGTACGTGTCATATTCTATGAGAAAATGATAGGAGGTCGCCTTTTCTACTGCTGTTTTAATACAGCTTTTATTAGGAACAGCTTACTACATCTCACAATACAAGAGTTGGACAAAGTTGGGAAGAAAGGAAGATCAGTATGTGGGCCTGACTTCTGCTTAGAATTATTGTTTGGTCCTGCTAATGCAGGATACTCATCATCAAGCATATCCAATGATGAACATTCTAGTGATGAATCTTTATAA 1215 0.3959 MGLKLIKQGPPKVEDLSLHHQMISYLTKNFIRNLVSKQRRRMLIDGYDLDMSYITERVLAMSFPAQRMRAMYRNPLWQIYNLCIEESYDPDNFYGRVEAYPFDDNHVPSLEMIKAFCESVDSWLASDPKNIAVIHCMAGKGRTGLMVSAYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVGYWDSLLSSSVPRVTGNEPTKVTLPQPCSRELRRIRLYDTTNIGTIFFVISELHEIPNEVYRPSVEASRGCCRQIKKGYQRNNSPRYYISILEEDDKDGKHSETEEPRIVVQMDTETSAIYQKSCLDHYFDKPIRVTGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLHLTIQELDKVGKKGRSVCGPDFCLELLFGPANAGYSSSSISNDEHSSDESL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0349 404 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 114 169 IPR000387 GO:0016311|GO:0016791
Aed3g0349 404 Pfam C2 domain of PTEN tumour-suppressor protein 303 381 IPR014020 -
Aed3g0349 404 ProSitePatterns Tyrosine specific protein phosphatases active site. 134 144 IPR016130 GO:0016311|GO:0016791
Aed3g0349 404 Gene3D Protein tyrosine phosphatase superfamily 26 195 IPR029021 -
Aed3g0349 404 Gene3D - 255 386 - -
Aed3g0349 404 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 44 195 IPR029021 -
Aed3g0349 404 Pfam Tyrosine phosphatase family 124 166 IPR026893 GO:0004721
Aed3g0349 404 ProSiteProfiles C2 tensin-type domain profile. 228 384 IPR014020 -
Aed3g0349 404 PANTHER BNAC03G16750D PROTEIN 1 396 - -
Aed3g0349 404 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 282 383 IPR035892 -
Aed3g0349 404 SMART PTEN_C2_2 210 383 IPR014020 -
Aed3g0349 404 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 396 - -
Aed3g0349 404 ProSiteProfiles Phosphatase tensin-type domain profile. 40 195 IPR029023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0349 Aed-Chr3 2477222 2479337 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0349 1 388 Protein tyrosine phosphatase (PTP) family AT5G39400 65.025 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0349 K01110 - gmx:100809938 741.11