Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0345 ATGGGCTGCGTGAGCTCGAAGAAGACCGTGGCCGTCGCCGGAGGCTCTACTCCGGAGGAGCCGTGCGTGGTGCATTCCGAGTTCGCGGAGGCGGATAAGCAGCAATGGGTCGGGGCGAAAGCGAAACGGCGTGGCGGAGGCGCGGGGGAGGAGGTGAGGAAGGAAAGGAACAGGGGGAGCTTGAGAGGTTCGGTGCCTTTAAGGTTGTCGTCGTCATCGTGTGGCTTTGTGGAGGCTGCTCAGCAGAATGCGGTTGGGTGGCCAACTTGGCTAACCTCTGTTGCCGGGGAAGCCATTCAAGGCTGGCTCCCTCTCAAACTAGACTCTTTTCAGAGATTGGATAAGATTGGACAGGGTACATATAGCACTGTATACAAAGCACGCGAAGTTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTGCGCTTTGACAAATTTCAAGCCGAAAGCATTAGGTTCATGGCAAGAGAGATACTAATTCTCCGCACACTTGACCACCCTAACATCGTGAAATTGGAGGGTATAATCACTTCACCACTATCAAATAGCATATACCTTGTGTTTGAATACATGGAGCATGACCTTGCTGGCCTAGTAGCTTCTCCTGATATAAACTTCACAGACTCACAGATTAAGACTTACATGAAACAGCTATTAAGTGGAATGGAGCATTGTCACCTTCGAGGTATTATGCATCGAGACATTAAAGTATCTAATATATTAGTGAACAATGAAGGTATTCTCAAGATAGCAGATTTTGGGTTAGCCAATACGCTTACCCCAAATAACAAGCAACCCTTAACAAGTCGTGTGGTGACTCTATGGTATCGTCCTCCTGAGCTCTTGATGGGATCAACAACTTATGGAGTTTCTGTGGATCTATGGAGTGTTGGCTGTGTTGAACAATTACACAAAATTTTCAAGCTTTGTGGTTCTCCACTTGGGGAGTACTGGAAAACGAATAAGCTTCCTCTGGCCACAGTGTTTAAACCTCGGACTAATTACGAAACCTCTCTTCATGAGAGGTGTAGAGGCTTTCCTGCAACTGCCGTAAACCTACTGGAGACTTTACTTTCCATTGATCCCTCCAAGCGCGGGACTGCCTCCCTCTGCACTCATTATTTCAGCACCAAGCCATATGCTTGCAATCCATCACTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCCAGAAATCGGGAAGATGTGCACAGGAAAATGAATGGAGATAAACTGAGAGAGGCTGTAACATCCAAAAGGCAAAGACGAGTCCAACAAGTTTCCCATGGCCATATCAATTTAAACAAATCAGCTTTGAAAGAGGTGCTCTTGCTTTCATTGCAGAATGCCACATACTACTAG 1365 0.4718 MGCVSSKKTVAVAGGSTPEEPCVVHSEFAEADKQQWVGAKAKRRGGGAGEEVRKERNRGSLRGSVPLRLSSSSCGFVEAAQQNAVGWPTWLTSVAGEAIQGWLPLKLDSFQRLDKIGQGTYSTVYKAREVETGRMVALKKVRFDKFQAESIRFMAREILILRTLDHPNIVKLEGIITSPLSNSIYLVFEYMEHDLAGLVASPDINFTDSQIKTYMKQLLSGMEHCHLRGIMHRDIKVSNILVNNEGILKIADFGLANTLTPNNKQPLTSRVVTLWYRPPELLMGSTTYGVSVDLWSVGCVEQLHKIFKLCGSPLGEYWKTNKLPLATVFKPRTNYETSLHERCRGFPATAVNLLETLLSIDPSKRGTASLCTHYFSTKPYACNPSLLPKYPPSKEMDARNREDVHRKMNGDKLREAVTSKRQRRVQQVSHGHINLNKSALKEVLLLSLQNATYY 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0345 454 Pfam Protein kinase domain 110 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0345 454 Gene3D Transferase(Phosphotransferase) domain 1 193 414 - -
Aed3g0345 454 SMART serkin_6 110 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0345 454 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Aed3g0345 454 SUPERFAMILY Protein kinase-like (PK-like) 104 371 IPR011009 -
Aed3g0345 454 ProSiteProfiles Protein kinase domain profile. 110 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0345 454 PANTHER CELL DIVISION PROTEIN KINASE 3 451 - -
Aed3g0345 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Aed3g0345 454 PANTHER CYCLIN-DEPENDENT KINASE 3 451 - -
Aed3g0345 454 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0345 Aed-Chr3 2464393 2466802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0345 102 431 Core Cell Cycle Gene Families AT5G10270 41.689 1.30e-91 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed3g0345 Pkinase 7.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0345 - - gmx:100796152 684.485