Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0338 ATGGGGTTGAAATTAATAAAGCAGGGACCCCCCAAAGTTGAGGATCTAAGTTTACATCATCAAATGATCAGTTACCTTACCAAGAATTTTATTCGTAACTTGGTATCTAAGCAACGAAGAAGAATGCTTATTGACGGTTATGATCTTGACATGTCATATATCACCGAGCGAGTATTAGCAATGTCATTTCCTGCACAACGTATGCGAGCAATGTATAGAAATCCTCTCTGGCAAGTCAAAGCTGTGTTGGACATGAGACATTATGATCATTATAAGATCTATAATCTCTGTATAGAAGAAAGTTATGATCCAGATAACTTCTATGGACGTGTGGAAGCATACCCCTTTGATGATAACCATGTTCCATCTCTTGAAATGATCAAAGCTTTCTGTGAAAGTGTGGATTCGTGGCTGGCAAGTGACCCAAAAAACATTGCTGTTATTCATTGCATGGCAGGAAAAGGTAGAACTGGATTAATGGTGAGTGCATACCTTACTTATTGCGGCATGTCAGCAGATGAGGCTCTCCAATTGTATGCAGATAGACGAACAACAAATAATGAAGGAGTATCAATACCAAGCCAACGTCGTTACGTGGGATACTGGGATAGTTTACTTTCAAGTTCCGTCCCAAGGGTAACTGGAAATGAACCAACAAAAGTGACCTTGCCTCAACCATGTAGCAGAGAATTGCGGCGGATCCGGCTTTATGATACAACCAACATTGGCACAATATTCTTTGTTATCTCAGAGCTACACGAGATTCCTAATGAGGTGTATCGTCCATCAGTGGAAGCTTCCCGTGGTTGTTGTAGACAGATAAAGAAAGGGTATCAGAGAAACAATAGCCCTCGCTATTATATCTCTATTCTGGAAGAAGATGATAAAGATGGAAAGCACTCAGAAACAGAAGAACCTCGCATTGTAGTTCAAATGGACACAGAGACTTCAGCAATATACCAAAAATCATGTTTGGACCATTATTTTGATAAACCTATCCGAGTAACTGGAGATGTACGTGTCATATTCTATGAGAAAATGATAGGAGGTCGCCTTTTCTACTGCTGTTTTAATACAGCTTTTATTAGGAACAGCTTACTACATCTCACAATACAAGAGTTGGACAAAGTTGGGAAGAAAGGAAGATCAGTATGTGGGCCTGACTTCTGCTTAGAATTATTGTTTGGTCCTGCTAATGCAGGATACTCATCATCAAGCATATCCAATGATGAACATTCTAGTGATGAATCTTTATAA 1257 0.3946 MGLKLIKQGPPKVEDLSLHHQMISYLTKNFIRNLVSKQRRRMLIDGYDLDMSYITERVLAMSFPAQRMRAMYRNPLWQVKAVLDMRHYDHYKIYNLCIEESYDPDNFYGRVEAYPFDDNHVPSLEMIKAFCESVDSWLASDPKNIAVIHCMAGKGRTGLMVSAYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVGYWDSLLSSSVPRVTGNEPTKVTLPQPCSRELRRIRLYDTTNIGTIFFVISELHEIPNEVYRPSVEASRGCCRQIKKGYQRNNSPRYYISILEEDDKDGKHSETEEPRIVVQMDTETSAIYQKSCLDHYFDKPIRVTGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLHLTIQELDKVGKKGRSVCGPDFCLELLFGPANAGYSSSSISNDEHSSDESL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0338 418 Pfam Tyrosine phosphatase family 138 180 IPR026893 GO:0004721
Aed3g0338 418 CDD PTP_PTEN 50 205 IPR045101 GO:0016791
Aed3g0338 418 PANTHER BNAC03G16750D PROTEIN 1 410 - -
Aed3g0338 418 ProSiteProfiles Phosphatase tensin-type domain profile. 40 209 IPR029023 -
Aed3g0338 418 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 44 209 IPR029021 -
Aed3g0338 418 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 296 397 IPR035892 -
Aed3g0338 418 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 410 - -
Aed3g0338 418 Pfam C2 domain of PTEN tumour-suppressor protein 317 395 IPR014020 -
Aed3g0338 418 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 183 IPR000387 GO:0016311|GO:0016791
Aed3g0338 418 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Aed3g0338 418 Gene3D Protein tyrosine phosphatase superfamily 26 209 IPR029021 -
Aed3g0338 418 Gene3D - 270 400 - -
Aed3g0338 418 ProSiteProfiles C2 tensin-type domain profile. 242 398 IPR014020 -
Aed3g0338 418 SMART PTEN_C2_2 224 397 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0338 Aed-Chr3 2429178 2432772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0338 1 402 Protein tyrosine phosphatase (PTP) family AT5G39400 67.980 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0338 K01110 - gmx:100809938 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0338 3 2429178 2432772 Aed3g0338 3 2429178 2432772 ECH