Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0327 ATGGAATACAGCAATTGGAGTGAATCGCTGCAAACCGCAATACCACTCCCATCTTTCCCACAACCCTCATCATATCATCCTACAGATTACCCATCTTACCCTCAAAACCCCATCCCTATCCCCTCTTCCTCTTCTTCTCTTCCCCTCAACCCTCCCGGCGTTGATCCCCAAACCCCATTGAACCCTATTATTAACTATGCGCCTCATGAATCCGTTCCCGGTTTGATCTACGCTCAGACCCCTATTGGCCCTAATTCATCTTCTGGCTATTGCTTGGACCAGACTTGGGCTGCCAGAGATGCTGTTAGGCAATTTGGTACTGACCCTACTCTCTATGCACCTGGCATCTCTTTGCCATCCAATGGCTCAGAACAGTTGGCTATGGCAAATCCTAGCACTTTGTGGTGGACAGATACCACAACTCAACCTCTTGTCAATGGAATACTGAAGAAAAACCAAAAGAAAGCTAAAACTAAGGTTGTGCAACCTGCATTTTGTGAAGTTTGCAAGATAGAATGCACCAGCAAGGAAGTGCTGGACCAGCATAAATTAGGAAAGAAGCACAAGAAGAGTGTGGAGAAACTAAGGGAATCATTGACACCTACCCCAGTTCAACCATCTGGGTCATTGAATCCTGTAATAGGACCCCAATTACCGGATGATAAGAGCAAATCCATCAATGGGAGTAAGAGCAAGAGAAAAAAAGTTGAAACTCCAGAGGATTTGGAGAAAAAGAAAAGGAAGGTTCTTGAGGGTGGGGCAGCAGCTGAAGCAGTTAAGATATGTGGCATATGTAACGTGGTGTGTAATAGTGTGACTGTTTATAATTATCATCTTGCAGGACAAAAGCATGCTGCTGTGCTGAAGAAAGCATTGGGTCATACACAATCCAATGCCAGTTGA 903 0.4496 MEYSNWSESLQTAIPLPSFPQPSSYHPTDYPSYPQNPIPIPSSSSSLPLNPPGVDPQTPLNPIINYAPHESVPGLIYAQTPIGPNSSSGYCLDQTWAARDAVRQFGTDPTLYAPGISLPSNGSEQLAMANPSTLWWTDTTTQPLVNGILKKNQKKAKTKVVQPAFCEVCKIECTSKEVLDQHKLGKKHKKSVEKLRESLTPTPVQPSGSLNPVIGPQLPDDKSKSINGSKSKRKKVETPEDLEKKKRKVLEGGAAAEAVKICGICNVVCNSVTVYNYHLAGQKHAAVLKKALGHTQSNAS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0327 300 PANTHER ZINC FINGER RNA-BINDING PROTEIN 16 299 - -
Aed3g0327 300 SUPERFAMILY beta-beta-alpha zinc fingers 259 292 IPR036236 -
Aed3g0327 300 MobiDBLite consensus disorder prediction 198 212 - -
Aed3g0327 300 SMART c2h2final6 164 188 IPR013087 -
Aed3g0327 300 SMART c2h2final6 260 284 IPR013087 -
Aed3g0327 300 MobiDBLite consensus disorder prediction 225 243 - -
Aed3g0327 300 PANTHER - 16 299 - -
Aed3g0327 300 SMART ZnF_U1_5 257 291 IPR003604 GO:0003676|GO:0008270
Aed3g0327 300 SMART ZnF_U1_5 161 195 IPR003604 GO:0003676|GO:0008270
Aed3g0327 300 MobiDBLite consensus disorder prediction 184 243 - -
Aed3g0327 300 MobiDBLite consensus disorder prediction 16 31 - -
Aed3g0327 300 SUPERFAMILY beta-beta-alpha zinc fingers 157 196 IPR036236 -
Aed3g0327 300 Gene3D Classic Zinc Finger 148 195 - -
Aed3g0327 300 Gene3D Classic Zinc Finger 230 291 - -
Aed3g0327 300 MobiDBLite consensus disorder prediction 16 56 - -
Aed3g0327 300 Pfam Zinc-finger of C2H2 type 165 188 - -
Aed3g0327 300 Pfam Zinc-finger of C2H2 type 261 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0327 Aed-Chr3 2366217 2369631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0327 160 291 C2H2 Transcription Factor Family AT5G61190 33.333 1.87e-14 72.0