Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0323 ATGGCTAGATCTCACTATTTGGCTCCTTTAACCTTTTTAATGGTTCTCTTTGTGCCAGCCTTGTCACATGGCCATGGCCATGGCCATCACGATGACGATAATTGGCATTTAGCCCATGCAACTTTTTATGGTGACATGCAAGGTGGAGACACCATGCAGGGTGCTTGTGGGTATGGTGATCTCTACCAGCAAGGATATGGGCTTGAAACCTCGGCCCTAAGCACGGCCCTATTCAACAATGGGCTCACATGTGGTGCGTGTTTCGAGATAAGGTGTGTGAATGACCCACAATGGTGCATTCCCAACGCAGGCCCAATAAAAGTAACCGCCACAAATTTCTGCCCCCCGAATTACGCAACACAATCTTTCGACCATTGGTGCAACCCTCCACAAGAGCACTTCGACTTGTCAATGAAAATGTTCACAACAATTGCCATATACAAAGCAGGGATAATCCCAGTGGAATATCGTAGGGTCCCATGCACCAAATCTGGGGGTCTCAAGTTTGAGATAAAAGGGAACCCTTATTGGTTGCTTGTTTTGTTGTACAACGTTGGCAATGCTGGTGATGTTACTCAAGTTAGCATCAAAGGCTCTTCCACCAATGGGTGGCAACAAATGACACGTGTTTGGGGACAGAATTGGGTTACTGGCTCTAATTTGGTGGGACAATCCTTGTCTTTTCAGGTCACTACTAGTGATCGCAAAGTGATGGAGTTTTATAATGTTGCCTCTTCAAATTGGCAATTTGGACAGAGCTACGAGAGCGACCACAATTTCTAG 783 0.461 MARSHYLAPLTFLMVLFVPALSHGHGHGHHDDDNWHLAHATFYGDMQGGDTMQGACGYGDLYQQGYGLETSALSTALFNNGLTCGACFEIRCVNDPQWCIPNAGPIKVTATNFCPPNYATQSFDHWCNPPQEHFDLSMKMFTTIAIYKAGIIPVEYRRVPCTKSGGLKFEIKGNPYWLLVLLYNVGNAGDVTQVSIKGSSTNGWQQMTRVWGQNWVTGSNLVGQSLSFQVTTSDRKVMEFYNVASSNWQFGQSYESDHNF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0323 260 SUPERFAMILY Barwin-like endoglucanases 14 184 IPR036908 -
Aed3g0323 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
Aed3g0323 260 SUPERFAMILY PHL pollen allergen 163 256 IPR036749 -
Aed3g0323 260 PANTHER EXPANSIN-A15 24 260 IPR002963 GO:0009664
Aed3g0323 260 PANTHER EXPANSIN-A21-RELATED 24 260 - -
Aed3g0323 260 Gene3D - 166 260 IPR036749 -
Aed3g0323 260 Pfam Lytic transglycolase 70 156 IPR009009 -
Aed3g0323 260 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Aed3g0323 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Aed3g0323 260 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Aed3g0323 260 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Aed3g0323 260 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Aed3g0323 260 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Aed3g0323 260 Gene3D - 19 162 IPR036908 -
Aed3g0323 260 Pfam Expansin C-terminal domain 168 244 IPR007117 -
Aed3g0323 260 SMART dpbb_1 70 156 IPR007112 -
Aed3g0323 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 166 IPR007112 -
Aed3g0323 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Aed3g0323 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Aed3g0323 260 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Aed3g0323 260 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Aed3g0323 260 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Aed3g0323 260 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Aed3g0323 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Aed3g0323 260 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Aed3g0323 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0323 Aed-Chr3 2347775 2349113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0323 1 260 Expansin Gene Family AT5G39270 55.357 1.43e-111 321
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0323 3 2347775 2349113 Aed3g0323 3 2347775 2349113 ECH