Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0311 ATGGCCCTCGACTCTCCCAAGTCCACCACCAGCGTCGTCCCAAATGAAATGGGGCAACTTGGGTTGAGTCAAAGGATCACTAAGCTGAGAAAAACCTCATTGACCGCACAAAAACGATCGTGGTTGGTTAATGACGACACTGAGAGTATCATAAGAGCGAGTCAGATTGTAAGAGCTCAACTGGTGCGTGCAGTGTCCTCCTCCCGAGTTTCCAATGCTGTTGTTGTTGCGGACACTGATCAGGACAAAAAGAAAGCCATAGAGATTAACCAAGCCAAACTTCTGTGTGCCTCAGCATTTGCTCCAAAATATAACAATGAGGTTGTTGTTGTTGGTGGCACTTGGAAAAGTCCCACATCACTCGCGCTTGCGGTTAGGCACTGTTTAACTGATTCAACGCCCCAACCCTGCAAACCGCGTCGTTTTGCTTATCCGGTGCTTAGCTCTCATTATAATAGTGGGTCAGATGTTGATACTGGGATTGGGAATGGCATCAGCCTTTCTCCCTCTCCGTTGTCTGTTTGTTTTCCCCATGAAAATGAAACCAATGACAGCAGCAGCAAGTACGATGGTCAGATGCATAGCTATCCGTACAAGAAAAACGGGCCGTACACGTGTCCGAAGTGCGAGCGCGTGTTTGAGACGTCGCAACGGTTTGCGGCGCACGTGAGTTCGAGTCACTACAAGTACGAGAGCAAGAGTGAGAGAAAGAAGAGACTGATGGCCAAAATCCGAAGGAGAAATCTCCGTATTGAATGGTCAACTGATGGTGGACTAACTGTTGTTCCTGACGATGACGATGACGATTCTTCTCCGCCTCCAACTACAACATTTTCATATGCACGAAATAACAACAACGTTGTTAGAGGAGTCAAGGTTGAAGGTGAGACTCATGGTGTGGCGCTTCAGCTTGCTCCTCCTCCTGGATGGGAAAAATTAACTGCTGGAGATGGTGTCAAAATCAAATTGGAGCCTGTCAATACATGA 987 0.4752 MALDSPKSTTSVVPNEMGQLGLSQRITKLRKTSLTAQKRSWLVNDDTESIIRASQIVRAQLVRAVSSSRVSNAVVVADTDQDKKKAIEINQAKLLCASAFAPKYNNEVVVVGGTWKSPTSLALAVRHCLTDSTPQPCKPRRFAYPVLSSHYNSGSDVDTGIGNGISLSPSPLSVCFPHENETNDSSSKYDGQMHSYPYKKNGPYTCPKCERVFETSQRFAAHVSSSHYKYESKSERKKRLMAKIRRRNLRIEWSTDGGLTVVPDDDDDDSSPPPTTTFSYARNNNNVVRGVKVEGETHGVALQLAPPPGWEKLTAGDGVKIKLEPVNT 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0311 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 232 IPR013087 -
Aed3g0311 328 SMART c2h2final6 204 227 IPR013087 -
Aed3g0311 328 MobiDBLite consensus disorder prediction 259 281 - -
Aed3g0311 328 ProSitePatterns Zinc finger C2H2 type domain signature. 206 227 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0311 Aed-Chr3 2282510 2283496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0311 179 266 C2H2 Transcription Factor Family AT2G18490 47.727 2.32e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed3g0311 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0311 - - gmx:100788426 296.589