Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0308 ATGGCGTTCTTAAATAAAATTGGAAATCTGCTCAAGAATTCTGCTGTCAAGCGCATCAATCATGATTTTTCTGTGTCTACTCCTTCTTCGCTTTTCCAAGCAATTAGATCCATGTCATCTGCAAAGGTTTTCGTCGGAGGTATTTCTTACAGCACCGATGATATGAGTTTGCGAGAGTCTTTTGCTCGCTTCGGAGAAGTAGTTGATGCCAAGGTAATTATGGATCGTGATACTGGCAGGTCAAGAGGTTTTGCCTTTGTAACTTTCACAACAAGTGAGGATGCATCTACTGCCATTCAGTCCATGGATGGCCAGCCTCTTGATTTTCATAAGTTCATTGTTTTGCTTGAACTTGATAGTTTGTCAGCTCAAAGACTGATGTAA 384 0.4089 MAFLNKIGNLLKNSAVKRINHDFSVSTPSSLFQAIRSMSSAKVFVGGISYSTDDMSLRESFARFGEVVDAKVIMDRDTGRSRGFAFVTFTTSEDASTAIQSMDGQPLDFHKFIVLLELDSLSAQRLM 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0308 127 Gene3D - 13 114 IPR012677 -
Aed3g0308 127 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 127 IPR000504 GO:0003723
Aed3g0308 127 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 108 - -
Aed3g0308 127 SMART rrm1_1 42 115 IPR000504 GO:0003723
Aed3g0308 127 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 108 - -
Aed3g0308 127 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 107 IPR000504 GO:0003723
Aed3g0308 127 SUPERFAMILY RNA-binding domain, RBD 27 114 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0308 Aed-Chr3 2270030 2271887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0308 31 100 C2H2 Transcription Factor Family AT2G19380 35.714 9.69e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0308 K12741 - gmx:100818300 179.489