LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed3g0306	ATGGAGCAAAGGCAGATCTTTGCTCATGTGGTGATTTTGTTGGTTATGGTCTTAGTTGTTGGAGCTAAGTATGGTAAAGCAGTAGAAGAAGGAGGCGGAGCTGCAGCGGATAGGATTTTTGAACTCCCTGGTCAGCCAAAAGTGTCATTTCAGCAGTTCTCTGGCTATGTTACTGTCAACAAGGTTCCTGGCAGAGCTCTCTTTTACTGGCTCACTGAAGCTGCCCAAAATCCTCTCACCAAACCTTTGGTCATTTGGCTCAATGGAGGTCCAGGATGTTCATCAGTGGCTTATGGAGCATCTGAGGAGATTGGGCCATTTAGAATAAACAAAACTGCTTCTGGGCTTTACATTAACAAGTTCTCATGGAACACAGTGGCCAACCTCTTGTTCTTGGAAGCTCCGGCCGGCGTGGGCTTCTCCTACACCAACCGCTCCGCCGACCTCCTCGACACCGGCGACCGCCGCACCGCCCAAGATTCTCTGAAATTTGTTATCCAATGGCTAGAACGATTCCCGCGTTACAAAAACCGGGAACTTTATATCACTGGAGAGAGCTATGCAGGCCATTATGTTCCTCAATTAGCCAGGGAAATCATGTACTATAACGCAAAAACCAAGCACCCCATCAATCTCAAAGGAATCATGGTAGGAAATGCAGTGACAGACAACTACTATGATAACTTGGGAACAGTGACGTATTGGTGGAGCCATGCTATGATCTCCGACCAGACTTATCGGCAACTAATGAGCACATGTGATTTTCACAGGCAGAAGGAATCTGATGAGTGTGAATCTGTGTATAGCTATGCAATGGATCAAGAATTTGGTAACATTGATCAGTACAACATCTATGCTCCTCCATGCAACAACTCTGATGGCAGTAGTAGAAGCTCTGCCACTCGCCGCACCATGCGCTTGCCTCATCGACCCCATGTGACTTTTAGGCATTGGTCTGGTTATGATCCATGTACAGAAAAGTATGCAGAGATATACTACAACAGGCCTGATGTTCAGAAAGCGCTTCATGCCAACAAAACCGGCATTCCTTATAGGTGGACTGCTTGCAGTGAGGTTTTGAATCGGAACTGGAATGATACAGATGTATCTGTTCTTCCAATTTATAGAGAGTTGATAGCTCACGGAATTAGAGTTTGGGTGTTCAGTGGGGATGTGGACTCAGTGGTTCCTGTCACAGCAACAAGATATGCCCTTGCACAGCTTAAGTTGACAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGGTGGACAGAGGTGTATGAAGGGGTAACATTTGCAACAGTGAGAGGAGCAGGGCATGAAGTGCCGCTATTCAAGCCAAGAGCTGCCCTTCAGTTATTCACATCATTCCTTGCAGGAAAGCCTCTTCCTAAGTCCTAG	1416	0.4633	MEQRQIFAHVVILLVMVLVVGAKYGKAVEEGGGAAADRIFELPGQPKVSFQQFSGYVTVNKVPGRALFYWLTEAAQNPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYINKFSWNTVANLLFLEAPAGVGFSYTNRSADLLDTGDRRTAQDSLKFVIQWLERFPRYKNRELYITGESYAGHYVPQLAREIMYYNAKTKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLMSTCDFHRQKESDECESVYSYAMDQEFGNIDQYNIYAPPCNNSDGSSRSSATRRTMRLPHRPHVTFRHWSGYDPCTEKYAEIYYNRPDVQKALHANKTGIPYRWTACSEVLNRNWNDTDVSVLPIYRELIAHGIRVWVFSGDVDSVVPVTATRYALAQLKLTTKIPWYPWYVKNQVGGWTEVYEGVTFATVRGAGHEVPLFKPRAALQLFTSFLAGKPLPKS	471

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed3g0306	471	PRINTS	Carboxypeptidase C serine protease (S10) family signature	168	193	IPR001563	GO:0004185\|GO:0006508
	Aed3g0306	471	PRINTS	Carboxypeptidase C serine protease (S10) family signature	435	448	IPR001563	GO:0004185\|GO:0006508
	Aed3g0306	471	PRINTS	Carboxypeptidase C serine protease (S10) family signature	132	142	IPR001563	GO:0004185\|GO:0006508
	Aed3g0306	471	PRINTS	Carboxypeptidase C serine protease (S10) family signature	119	131	IPR001563	GO:0004185\|GO:0006508
	Aed3g0306	471	Pfam	Serine carboxypeptidase	44	464	IPR001563	GO:0004185\|GO:0006508
	Aed3g0306	471	ProSitePatterns	Serine carboxypeptidases, serine active site.	182	189	IPR018202	GO:0004185
	Aed3g0306	471	Gene3D	-	324	361	-	-
	Aed3g0306	471	ProSitePatterns	Serine carboxypeptidases, histidine active site.	435	452	IPR033124	GO:0004185
	Aed3g0306	471	Gene3D	alpha/beta hydrolase	33	291	IPR029058	-
	Aed3g0306	471	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 25	12	470	-	-
	Aed3g0306	471	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	12	470	IPR001563	GO:0004185\|GO:0006508
	Aed3g0306	471	SUPERFAMILY	alpha/beta-Hydrolases	35	469	IPR029058	-
	Aed3g0306	471	Gene3D	-	371	465	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed3g0306	Aed-Chr3	2255942	2261061	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed3g0306	329	468	Calmodulin-binding Proteins	AT2G22960	31.206	3.47e-16	75.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed3g0306	K16297		-	gmx:100807680	893.649