Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0303 ATGTTTTCTTCTTCTTCTATAGTGATCAAATGGAGGTTCCATCACAAGCCCATGACGCTCGTGCGACTCTTCACACTCGTGTGCCTCCTACTCGTTTCCCTAAACGGCGTCGTTTCGTCCGATTCCGACAAATCAGTGCTCCTCGAGCTGAAACACTCGCTCTCCGACCCCTCCCGGCTGCTCGCCACGTGGAAGGGCTCCGACCACTGCGTGTGGTCCGGCGTGCTCTGTGACTCCGCCACGCGCCGCCGCGTCGTCGCGATCAACGTCACCGGCAACGGAGGTAACCGGAAATCCCTTTCTCCTTGCTCCGATTTCACTCAATTTCCCCTCTACGGGTTCGGAATTAGGAGGAGCTGCGAGGGCTTTCGTGGCGCATTGTTCGGTAAGCTTTCTCCGAAGCTCAGTGAACTCACGGAACTTAGGGTTTTGTCCCTTCCTTTCAATGGCCTCGAGGGTGAGATTCCCGAGGAAATTTGGGGCATTGAGAAGTTGGAGGTGCTTGATCTCGAGGGGAATTTGATAAGTGGGGTTCTCCCTCTTAGGTTTAATGGCTTGAAAAACTTGAGGGTTCTTAATCTAGGGTTTAATAGGATGGTTGGGGAGATTCCGAGTTCGTTGTCTAGTGTTAAGAGTTTGGAGGTTTTGAATTTGGCAGGGAATGGGATTAACGGGTCTGTTCCTGGCTTTGTAGGGAGGTTGAGAGGGGTGTATTTGTCATATAACTGGCTTGGTGGGGCTATTCCTGAGGAGATTGGGGAACATTGTGCGAAAATGGAGCATCTTGATTTGTCTGGTAATTTTTTGATGCAGAGAATTCCCGGGAGTTTGGGGAATTGTAGTGAGTTGAGGACAGTGTTGTTGCATTCAAATATGTTGGAGGATGTTATTCCTGCTGAGCTTGGGAGGCTTAGGAACCTTGAGGTGTTGGATGTGTCGAGGAATTCTCTTGGTGGTTCTGTGCCAATGGAGCTTGGGAATTGTACTGAGTTGTCTGTGCTGGTTTTGTCCAATCTTTTTAGTTCGGTTCTGTATGTTAATGGTAGCGCAAGGGACTTGGGGGTGGATCAGATGGTTGCTATGAATATTGATGAGTTTAATTACTTTGAAGGTCCGGTTCCTGTTGAGATTATGAACCTTCCTAAGCTGAGAGTGCTCTGGGCACCTAGGGCAAATCTGGAAGGTAGTTTTCTGAGCAGTTGGGGTAAGTGTGATAGCTTGGAGATGCTCAATTTGGCTCTAAATGATTTGACTGGGGATTTTCCTAATCAGCTTGGTGGCTGCAAGAATCTCCATTTTCTTGATTTGAGTGCAAACAACCTTACTGGTGTGCTTGCGGAAGAACTTCCTGTGCCTTGTATGACCGTGTTTGATGTTAGTGGGAATGTCTTATCTGGCTCAATTCCCGAATTCTCTATTGGCACGTGTGCTTCGGTTCCTTCCTGGAGTGGAAATCTGTTTGAAATCAATGACAGAGCACTTCCATACAAATCCTTTTTTGCATCTAAGATTCTTGGAGGGTCCATTTTGTCATCACTAGGAGAAGTTGGCCGTTCCGTTTTTCACAACTTTGGTCAAAACAACTTTGTTGGCTTGGAGTCATTGCCAATAGCACCTGACAGGCTAGGGAAGGGATTCGCTTATGCGATTCTTGTTGGAGAAAACAAGTTGGCAGGACCTTTTCCTACTAATTTATTTGAGAAATGTGATGGGCTAAATGCATTGATTTTAAATGTGAGTTATACTATGTTATCCGGTCAGATTCCTTCCAAGTTTGGTGGAATGTGCAGATCATTGAAATTCTTGGATGCATCTGGTAATCAGATTACCGGGCCAATCCCCATAGGTTTGGGGGATATGGTCTCTCTTGTTTCTCTGAACCTAAGTTGGAACCGTTTTCAAGGTCAGATTCCAGTCAACCTTGGCCAGTTGAAGAATCTGAAGTTTCTGGCTTTGGCTGATAATAACTTAAATGGTTCCATCCCTACCAGCCTGGAGCAGTTGTATTCTTTAGAAGTCCTGGACATTTCTTCAAATTCACTTACAGGTGAAATTCCAAAAGGTATTGAGAACTTGAGAAACCTGACTGATGTTTTGCTTAACAATAACAAACTTTCTGGACAGATTCCTGCTGGTTTGGCAAATGTCAGTACACTGTCAGCATTTAATGTGTCATTCAATAACTTATCTGGATCCTTGCCTTCAAATGGTAACTCAATAAAATGCAGCAATGCTGTTGGGAATCCATTCTTACATTCTTGCAATGAAGTTTCTCTTGCTGTGCCATCAGCAGACCAAGGGCTGGTTGATAATTCTAGTTCTTATACTGCTGCACCACCAGAAGTTACAGGCAAAAAGGGTGGGAATGGTTTCAATTCTATCGAAATAGCATCTATAACTTCTGCATCAGCCATTGTTTCTGTTCTTTTAGCTCTAATCATCCTTTTTATTTATACCCGGAAGTGGAACCCTAGGTCCAGGGTTGTTGGGTCTACGAGAAAAGAAGTTACAGTGTTCACCGATATTGGGGTTCCCCTGACATTTGAAAATGTTGTCCGGGCCACAGGAAATTTCAATGCTAGCAACTGCATTGGGAATGGAGGATTTGGGGCAACCTATAAGGCAGAGATAGTACCAGGAAACTTGGTAGCAATAAAACGTCTGGCAGTTGGACGATTCCAAGGTGTTCAACAATTCCATGCAGAGATTAAGACGCTTGGAAGGCTTCGTCATGCAAATCTTGTCACACTGATTGGTTATCATGCCAGTGAGACTGAGATGTTTCTCATATACAACTATTTGCCAGGTGGCAATCTGGAAAAGTTTATCCAAGAGAGGTCCTCAAGGGCTGTGGATTGGAGGATTCTTCACAAGATTGCATTGGATATAGCCCGTGCACTTGCATACCTGCATGATCAGTGTGTACCGCGTGTTCTTCATCGCGATGTCAAGCCCAGTAATATCTTGCTAGATGATGATTATAATGCTTATCTATCTGACTTTGGATTGGCTAGACTACTGGGAACCTCAGAAACTCATGCTACTACTGGCGTAGCAGGAACGTTTGGCTATGTTGCTCCTGAATATGCTATGACCTGTCGAGTTTCTGACAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTACTCTCTGACAAGAAGGCGCTGGATCCTTCATTTTCTTCTTATGGGAATGGTTTCAACATAGTAGCATGGGCATGCATGCTACTGCGACAAGGCCAGGCAAAGGATTTCTTCGCGGCCGGCCTATGGGATGCAGGACCTGAAGATGATTTGGTAGAGATCCTACACTTGGCTGTTGTGTGTACGGTTGACTCTCTCTCAACCAGACCTTCAATGAAACATGTTGTACGGAGGCTCAAGCAACTTCAACCGCCATCATGCTAG 3414 0.4537 MFSSSSIVIKWRFHHKPMTLVRLFTLVCLLLVSLNGVVSSDSDKSVLLELKHSLSDPSRLLATWKGSDHCVWSGVLCDSATRRRVVAINVTGNGGNRKSLSPCSDFTQFPLYGFGIRRSCEGFRGALFGKLSPKLSELTELRVLSLPFNGLEGEIPEEIWGIEKLEVLDLEGNLISGVLPLRFNGLKNLRVLNLGFNRMVGEIPSSLSSVKSLEVLNLAGNGINGSVPGFVGRLRGVYLSYNWLGGAIPEEIGEHCAKMEHLDLSGNFLMQRIPGSLGNCSELRTVLLHSNMLEDVIPAELGRLRNLEVLDVSRNSLGGSVPMELGNCTELSVLVLSNLFSSVLYVNGSARDLGVDQMVAMNIDEFNYFEGPVPVEIMNLPKLRVLWAPRANLEGSFLSSWGKCDSLEMLNLALNDLTGDFPNQLGGCKNLHFLDLSANNLTGVLAEELPVPCMTVFDVSGNVLSGSIPEFSIGTCASVPSWSGNLFEINDRALPYKSFFASKILGGSILSSLGEVGRSVFHNFGQNNFVGLESLPIAPDRLGKGFAYAILVGENKLAGPFPTNLFEKCDGLNALILNVSYTMLSGQIPSKFGGMCRSLKFLDASGNQITGPIPIGLGDMVSLVSLNLSWNRFQGQIPVNLGQLKNLKFLALADNNLNGSIPTSLEQLYSLEVLDISSNSLTGEIPKGIENLRNLTDVLLNNNKLSGQIPAGLANVSTLSAFNVSFNNLSGSLPSNGNSIKCSNAVGNPFLHSCNEVSLAVPSADQGLVDNSSSYTAAPPEVTGKKGGNGFNSIEIASITSASAIVSVLLALIILFIYTRKWNPRSRVVGSTRKEVTVFTDIGVPLTFENVVRATGNFNASNCIGNGGFGATYKAEIVPGNLVAIKRLAVGRFQGVQQFHAEIKTLGRLRHANLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSSRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDYNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGQAKDFFAAGLWDAGPEDDLVEILHLAVVCTVDSLSTRPSMKHVVRRLKQLQPPSC 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0303 1137 PRINTS Leucine-rich repeat signature 431 444 - -
Aed3g0303 1137 PRINTS Leucine-rich repeat signature 668 681 - -
Aed3g0303 1137 SMART serkin_6 858 1110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0303 1137 SUPERFAMILY L domain-like 131 269 - -
Aed3g0303 1137 ProSitePatterns Serine/Threonine protein kinases active-site signature. 978 990 IPR008271 GO:0004672|GO:0006468
Aed3g0303 1137 ProSiteProfiles Protein kinase domain profile. 858 1137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0303 1137 SUPERFAMILY L domain-like 234 734 - -
Aed3g0303 1137 Pfam Leucine rich repeat 164 223 IPR001611 GO:0005515
Aed3g0303 1137 Pfam Leucine Rich Repeat 260 280 IPR001611 GO:0005515
Aed3g0303 1137 Pfam Leucine Rich Repeat 670 692 IPR001611 GO:0005515
Aed3g0303 1137 ProSitePatterns Protein kinases ATP-binding region signature. 864 886 IPR017441 GO:0005524
Aed3g0303 1137 CDD STKc_IRAK 864 1132 - -
Aed3g0303 1137 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 17 1136 - -
Aed3g0303 1137 SUPERFAMILY Protein kinase-like (PK-like) 840 1129 IPR011009 -
Aed3g0303 1137 Pfam Leucine rich repeat N-terminal domain 41 78 IPR013210 -
Aed3g0303 1137 Gene3D Ribonuclease Inhibitor 357 544 IPR032675 -
Aed3g0303 1137 Gene3D Ribonuclease Inhibitor 233 343 IPR032675 -
Aed3g0303 1137 Gene3D Ribonuclease Inhibitor 549 764 IPR032675 -
Aed3g0303 1137 Pfam Protein kinase domain 861 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0303 1137 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 1136 - -
Aed3g0303 1137 Gene3D Transferase(Phosphotransferase) domain 1 934 1134 - -
Aed3g0303 1137 SMART LRR_typ_2 186 210 IPR003591 -
Aed3g0303 1137 SMART LRR_typ_2 668 691 IPR003591 -
Aed3g0303 1137 SMART LRR_typ_2 304 328 IPR003591 -
Aed3g0303 1137 SMART LRR_typ_2 620 644 IPR003591 -
Aed3g0303 1137 SMART LRR_typ_2 692 715 IPR003591 -
Aed3g0303 1137 SMART LRR_typ_2 138 161 IPR003591 -
Aed3g0303 1137 SMART LRR_typ_2 162 185 IPR003591 -
Aed3g0303 1137 SMART LRR_typ_2 231 255 IPR003591 -
Aed3g0303 1137 Gene3D Phosphorylase Kinase; domain 1 821 933 - -
Aed3g0303 1137 Gene3D Ribonuclease Inhibitor 39 232 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0303 Aed-Chr3 2228688 2232101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0303 23 1137 Receptor kinase-like Gene Family AT3G02130 63.084 0.0 1332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Aed3g0303 Pkinase 5.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0303 - - gmx:100803058 2024.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0303 3 2228688 2232101 Aed3g0303 3 2228688 2232101 ECH