Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0300 ATGCGTGAAAGTTCACAAGTAGCTTTCGCACACCCCTTTTTTCGTGCGCAAACTGTTCCCGTTGGTCTCTTCCCTCTGCAATTCACAATTCACAACCCCACACTCCTCACTGTGCCATCTCTCATCATCTTCGCAATCACGCCCTTCCCAGGTCATGTGCTTAGGCCTGAGGTTGGTACGATGGCCTTGCAAACAGCTACTCCTCCAACTACTCCCAGTGCCCAAGTTGTTGGTAATGCATTTGTTGAGCAGTATTACCATATTCTTCACCATTCACCGGATTTGGTCTATCGGTTTTACCAGGATTCTAGTGTGATAAGCCGTCCTGATTCCAGTGGTGTGATGACATCAGTTACAACCATGAAAGGCATTAATGAGAAGATTCTTTCACTAAATTTCAAGGAATTCAAAGCAGAGATAAAGACTGCAGATGCTCAAAAATCATACAAGGAAGGAGTGACTGTGCTGGTTACTGGATGCTTGACTGGCAAAGATAACTTGAGAAGAAAATTTGCACAGTCATTCTTTCTTGCTCCACAAGACAATGGCTATTTTGTTCTGAATGATGTGTTTAGGTATGTAGAAGACCATGAACCATCAGAACTGCCTCCAGTTACTGGAGATGAGCCCACTCATGTTGCTGATTCTTCTGCACCAGACCCCACAAATTCTCATGTGAACAAAGGTCAGAGTCAAACTGTTGCTGAGAATGCTTATGAGGCATCTAATCATCATGAGAGACAGATTCCTGTTGAGAATGAAGACAGTGTAGAACCACATTTTCAGTCAAATGGTAATGATGATTCTCAGGCCACAGAACTGACTTCTTCAGCTCAAGAGGACACTCCAAAGAAGTCTTATGCATCAATTGTGAAAGTCCCAAAAGGGAGTTTGGTACCAACTAAAGTCTATGTGCCTACTAATACAATAAAGTCAGGACCTAACAAAACTGAGAGCCTGGTAGTTGAGTCAGTAGAATCTACTGAAGTGCCTGAATCAGCTTTGGATAGTGTTAACAACCCTGAAAGTAGTGATGCTCATGAGGAAGTTGAGGGGCACTCCATTTACATTCGAAATTTGCCTTTAAATGTGACGGTTGCTCTGTTGGAACTGGAGTTTAAGAAATTTGGACCCATCAAGCCAGGAGGCATCCAAGTCAGAAATAATAAGCAGCAGGGATACTGTTTTGGCTTTGTTGAGTTCCTATCTCTAAATTCCATGAATAGTGCAATTCAGTGCATTACTTCTACAGTTCTACATCTAGTTGGTGGTAGTTTTGTAGTCTACTTGTTTGAGGCTTCACCTATTCCTATTGGGGGGCGTCAAGCTGTAGTGGAGATAAAGAGAACCACTACCCGAGTTGGCAGTGGCATTAACAGTACTGGAAGACCTAGGATCCCATCTGGTAGGGGTGGGTTACGAAATGACTCTTTCAGGGGCCGTGGGAATTATGGTGGCGGTCGGGGATACGGTAGAAATGATTATGTAAATCGTGGCGAGTTTTCTGGCAGAGGCCGTGGTCATGGAGAAGGTTATCACCAAGGGAGAGGGAGAGGTGGCCGGTCAAGCGGACAAAAACAAAATGAGGTTTCCAACTGA 1599 0.4415 MRESSQVAFAHPFFRAQTVPVGLFPLQFTIHNPTLLTVPSLIIFAITPFPGHVLRPEVGTMALQTATPPTTPSAQVVGNAFVEQYYHILHHSPDLVYRFYQDSSVISRPDSSGVMTSVTTMKGINEKILSLNFKEFKAEIKTADAQKSYKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRYVEDHEPSELPPVTGDEPTHVADSSAPDPTNSHVNKGQSQTVAENAYEASNHHERQIPVENEDSVEPHFQSNGNDDSQATELTSSAQEDTPKKSYASIVKVPKGSLVPTKVYVPTNTIKSGPNKTESLVVESVESTEVPESALDSVNNPESSDAHEEVEGHSIYIRNLPLNVTVALLELEFKKFGPIKPGGIQVRNNKQQGYCFGFVEFLSLNSMNSAIQCITSTVLHLVGGSFVVYLFEASPIPIGGRQAVVEIKRTTTRVGSGINSTGRPRIPSGRGGLRNDSFRGRGNYGGGRGYGRNDYVNRGEFSGRGRGHGEGYHQGRGRGGRSSGQKQNEVSN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0300 532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 450 IPR000504 GO:0003723
Aed3g0300 532 MobiDBLite consensus disorder prediction 216 239 - -
Aed3g0300 532 Gene3D - 326 497 IPR012677 -
Aed3g0300 532 Gene3D - 68 197 - -
Aed3g0300 532 SUPERFAMILY RNA-binding domain, RBD 341 419 IPR035979 GO:0003676
Aed3g0300 532 Pfam Nuclear transport factor 2 (NTF2) domain 77 193 IPR002075 -
Aed3g0300 532 SUPERFAMILY NTF2-like 73 194 IPR032710 -
Aed3g0300 532 ProSiteProfiles Nuclear transport factor 2 domain profile. 77 193 IPR018222 -
Aed3g0300 532 MobiDBLite consensus disorder prediction 198 288 - -
Aed3g0300 532 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 61 531 IPR039539 -
Aed3g0300 532 MobiDBLite consensus disorder prediction 454 532 - -
Aed3g0300 532 MobiDBLite consensus disorder prediction 328 347 - -
Aed3g0300 532 MobiDBLite consensus disorder prediction 257 284 - -
Aed3g0300 532 MobiDBLite consensus disorder prediction 240 254 - -
Aed3g0300 532 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 61 531 - -
Aed3g0300 532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 355 416 IPR000504 GO:0003723
Aed3g0300 532 CDD RRM_SF 355 420 - -
Aed3g0300 532 SMART rrm1_1 354 428 IPR000504 GO:0003723
Aed3g0300 532 MobiDBLite consensus disorder prediction 499 515 - -
Aed3g0300 532 CDD NTF2 73 195 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0300 Aed-Chr3 2198811 2206243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0300 354 419 Eukaryotic Initiation Factors Gene Family AT2G36660 37.313 6.85e-06 47.0