Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0257 ATGGAAGCTATGATGGGTTCCCAAGCAAGCGAAAAAGAGTGGAGGAAAGGCCCTTGGACTGCTGAAGAGGACAAGTTGCTGAATGAATATATTAGCTTGCATGGAGAGGGTGGATGGAGCTCAGTGGCGAGGTGTACAGCATTAAATAGGAGTGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAGGCCCGGCCTCAAGAAAGGTCAATTAGCACCTATAGAAATAGGAATCATTATTGAACTGCATGCAATTTTTGGTAACAAGTGGTCTACAATTGCAAAGTACTTGCCAGGAAGAACTGATAACGAGATTAAGAACTACTGGAGAACTCACTTCGGGAAGGGTAGTGAGAAATCCAAACACAAAGCAAAGATGCTGAAACAGTTGAAACAAAAGCAACAACAACCTCAAGAGTACTATGATATCGAAAGCATCAAGTCTCATGAAAAGGCAAAAATTGAAGCAAATTCCTTTGAGACACAAAACAATAAGCAAAAAGAAGTGGCTTTCATGTGTCCAACAATGGAGCACCAATATACTCTTCCTTCAATGCATGAGGAATTCTCATCCACGTGGCCAGACACAGTACTAGCGGATGATGGCTCATGGTTTAGTTTATGGGACTTCGATGAACCACAAAGTTTTGCGGATTATGCTAACCAGTTTAGTGAACGTGTCGTGCCAAATAATCAAGCTACCTTTGGAGTTGGGGGGGATTCCATGCAAAATCACGATAAAACCTTTTGTTTCGATCATACCTACGATATATAA 777 0.4144 MEAMMGSQASEKEWRKGPWTAEEDKLLNEYISLHGEGGWSSVARCTALNRSGKSCRLRWVNYLRPGLKKGQLAPIEIGIIIELHAIFGNKWSTIAKYLPGRTDNEIKNYWRTHFGKGSEKSKHKAKMLKQLKQKQQQPQEYYDIESIKSHEKAKIEANSFETQNNKQKEVAFMCPTMEHQYTLPSMHEEFSSTWPDTVLADDGSWFSLWDFDEPQSFADYANQFSERVVPNNQATFGVGGDSMQNHDKTFCFDHTYDI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0257 258 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Aed3g0257 258 Pfam Myb-like DNA-binding domain 79 113 IPR001005 -
Aed3g0257 258 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Aed3g0257 258 Gene3D - 17 68 - -
Aed3g0257 258 CDD SANT 79 114 IPR001005 -
Aed3g0257 258 Gene3D - 73 145 - -
Aed3g0257 258 PANTHER MYB TRANSCRIPTION FACTOR 4 220 - -
Aed3g0257 258 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Aed3g0257 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Aed3g0257 258 SMART sant 68 116 IPR001005 -
Aed3g0257 258 SMART sant 15 65 IPR001005 -
Aed3g0257 258 CDD SANT 18 63 IPR001005 -
Aed3g0257 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 220 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed3g0257 258 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Aed3g0257 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0257 Aed-Chr3 1906751 1908022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0257 15 223 MYB Transcription Factor Family AT3G30210 51.389 1.05e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g0257 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0257 K09422 - gmx:100817474 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0257 3 1906751 1908022 Aed3g0257 3 1906751 1908022 ECH