Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0256 ATGCATGGTTATCCACATGCCATCATCATCGACTTGACCGTTCTTCTTTTCTTTGACCACCTGAAAATCAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGTGCTGTGGAAGTTAGCAAACCTGCTAAAGAGCTCGAGCAGAGCAGCTACCGTGAATACATGAAGCTGAAAGGAAGATTTGAATCGCTTCAGAGGACCCAAAGAAACCTTTTAGGGGAAGACTTGGGCCCACTGAATTCCAAAGAACTTGAGCAGCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACCAAGACACAATTCATGCTGGACCAGTTATCTGATCTGCAAAATAAGGAGCATATGTTGGTAGAAGCAAACAGATCCTTGACAATGAAGCTGGAAGAAATGAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGTCATATGGTGGTCCACAGAGTTCTCACTCTCAGGGCTTCTTCCAGCCATTGGAATGCAACCCCACATTGCAGATTGGTCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAACTCAGTCTCAACAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTTTGA 639 0.4413 MHGYPHAIIIDLTVLLFFDHLKISMLKTLERYQKCSYGAVEVSKPAKELEQSSYREYMKLKGRFESLQRTQRNLLGEDLGPLNSKELEQLERQLDSSLKQVRSTKTQFMLDQLSDLQNKEHMLVEANRSLTMKLEEMNSRNHYRQSWEAGDQSMSYGGPQSSHSQGFFQPLECNPTLQIGPDYRYNDVASDQITATTQSQQQVSGFIPGWML 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0256 212 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 196 - -
Aed3g0256 212 Coils Coil 87 107 - -
Aed3g0256 212 PANTHER MADS BOX PROTEIN 23 196 - -
Aed3g0256 212 ProSiteProfiles K-box domain profile. 50 140 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed3g0256 212 Pfam K-box region 50 134 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0256 Aed-Chr3 1895097 1898060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0256 3 212 MADS-box Gene Family AT5G15800 60.086 6.89e-76 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0256 K09264 - gmx:100786066 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0256 3 1895097 1898060 Aed10g1151 10 10763980 10772132 ECH
Aed3g0256 3 1895097 1898060 Aed6g1649 6 20358159 20363267 ECH
Aed3g0256 3 1895097 1898060 Aed3g0256 3 1895097 1898060 ECH
Aed3g0256 3 1895097 1898060 Aed3g0997 3 7511890 7518155 ECH
Aed11g0494 11 4337179 4350058 Aed3g0256 3 1895097 1898060 ECH