Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0255 ATGGGAAGGGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACCAGCCAGCAAGTCACGTTTTCCAAGCGTAGATCGGGACTTCTCAAGAAAGCCAATGAAATCTCTGTTCTTTGTGATGCTCAAGTCGCTTTGATTGTCTTCTCTACCAAAGGCAAACTTTTTGACTATTCCTCTGAACGCAGCATGGAAGACGTCCTTGAACGTTACGAGAGATATACCCAAACTGAAATTGTTGGAGCTAACAATGAATCACAGGGAAATTGGTCTTTCGAATTTATCAAGCTCACACATAAAGTTGAAGTATTGGACAGGAACGTAAGGAATTTCATGGGAAATGATCTGGATCCCTTGAGTTTGAAAGAGCTTCAGTGTTTGGAGCAGCAGCTTGACACATCTCTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATCAATCCATCTCAGAGATGCATAAAAGGGCAAGGACACTACAAGAGCAAAACAGCAAGCTAGCAAAGATGAAGGAGAAAGTGAAGATACCGACTGAAGGTCCACCCAACGGCCCAGAAACTCTAGGCCAAAATTCATCCACCCTCAACTTATCTTTTCCAGAGCTACTACTACCAGTACCACCACCAGAAAGACTGGTTCCTTCTCTAACTCTCAGTAAGACATTGGTGCAAGGAAGAGGATCGGTGGAAGAAACGGGTGAAACTCAAACAGTAGCCCCAAGTGGCAATTCTCTCATCCCACCATGGATGCTGCATATCTGA 759 0.444 MGRGRVQLKRIENKTSQQVTFSKRRSGLLKKANEISVLCDAQVALIVFSTKGKLFDYSSERSMEDVLERYERYTQTEIVGANNESQGNWSFEFIKLTHKVEVLDRNVRNFMGNDLDPLSLKELQCLEQQLDTSLKRIRTRKNQVMNQSISEMHKRARTLQEQNSKLAKMKEKVKIPTEGPPNGPETLGQNSSTLNLSFPELLLPVPPPERLVPSLTLSKTLVQGRGSVEETGETQTVAPSGNSLIPPWMLHI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0255 252 ProSiteProfiles K-box domain profile. 86 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed3g0255 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed3g0255 252 PANTHER MADS BOX PROTEIN 1 226 - -
Aed3g0255 252 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Aed3g0255 252 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Aed3g0255 252 MobiDBLite consensus disorder prediction 172 192 - -
Aed3g0255 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed3g0255 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed3g0255 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed3g0255 252 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Aed3g0255 252 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 226 - -
Aed3g0255 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed3g0255 252 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed3g0255 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0255 Aed-Chr3 1885776 1892249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0255 1 175 MADS-box Gene Family AT1G26310 59.444 7.11e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed3g0255 K-box 4.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0255 K09264 - gmx:100786580 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0255 3 1885776 1892249 Aed6g1650 6 20364230 20369586 ECH
Aed3g0255 3 1885776 1892249 Aed3g0255 3 1885776 1892249 ECH
Aed3g0255 3 1885776 1892249 Aed3g0998 3 7525474 7539471 ECH
Aed11g0495 11 4350458 4356150 Aed3g0255 3 1885776 1892249 ECH