Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0247 ATGCTTGTCCCCTTCTCACGGCCTCGTCTCCGTCGGTGCTCGCTTCATCGCTTCGTCGCAGCTTCGACAAGATCCCGAAGCCCCTGGCTCTGTTCTCTTCTGGTCCTGCCTCAAGTTGAAGTGAAGAGTTTTCCTGCTGAACAAGTTAAACCTCTTGCTGCTAATCACCCGGGAACCTTTATAGCTGGTGGAGCTCCGTCTGGTGACATTTACTTGTGGGAGGTTGAAACTGGTAGGTTGCTTAAGAAGTGGCGTGCTCATTTTAGGGCAGTTTCTTGCCTGGTGTTTTCTGAAGATGACTCACTGCTGGTATCTGGTTCGGAAGATGGATCTGTCAGAGTCTGGTCTCTCTTCATGATATTTGATGAATTTCGAAGTCAGCAAGCAACTAATCTTTATGAGTATAGTTTTTCAGAGCACACCATGCATGTGACTGATGTTGTTATTGGAAATGGGGGGTGCAATGCGATTATTGTGTCAGCTTCAACGGATCGGACTTGTAAGGTATGGAGCTTATCTAGGGGAACACTTCTAAGAAATATAGTATTTCCGTCAGTAATTAATTGCATTGCATTGGATCCAGCCGAACATGTCTTTTATGCTGGCAGTGAAGATGGAAAGATATATATTGCAGCACTTAACACTGAAAGCATCACCACTAATAACTATGGGATGCATATCCTTGGTTCTTTTTCTAACCACAGCAACCAAGTTACTTGCTTAGCATATGGCACAAGTGAGAATTTGTTAATATCTGGGTCAGAGGATGGAATTGTTCGTGTTTGGAATGCGAGAACTCGTAACATTGTCCGCATGTTTAAACATGCTAAAGGACCTGTAAATAATATTCTCGTTGTTAGACGAGAAAATGACTCTAGTAATCACACATCTTCTAATGTACAAGCTTCATCAAGAAAGCAAGGGTCTAATTTACCCCCTCCTTTGGAAAAATATGCAAATTCAATAGATGAACAAGACTCAGATATGAAGACTATGATTAGCCTTGGGAGTGGCAGGAGATCTGTGGATCCTTCATACCTCAGTTCTCATGTGATATCTAATTACATTAAGGAACTTCAGCATCAAGGTTCAGCTGCTGCTTCTGAAATGGAGATGGAGAAACTAAAACATGATTACCAAAGGTCAATGCAAATGTCTAACCAGTGGGAGAAAATGTATGAAAACTTGCATCAGTTTTGTGTAAAGGAGATGTTGGATGGTGGTCAAGCTAGAACCCTAGATGATAATGACAATTAA 1257 0.4193 MLVPFSRPRLRRCSLHRFVAASTRSRSPWLCSLLVLPQVEVKSFPAEQVKPLAANHPGTFIAGGAPSGDIYLWEVETGRLLKKWRAHFRAVSCLVFSEDDSLLVSGSEDGSVRVWSLFMIFDEFRSQQATNLYEYSFSEHTMHVTDVVIGNGGCNAIIVSASTDRTCKVWSLSRGTLLRNIVFPSVINCIALDPAEHVFYAGSEDGKIYIAALNTESITTNNYGMHILGSFSNHSNQVTCLAYGTSENLLISGSEDGIVRVWNARTRNIVRMFKHAKGPVNNILVVRRENDSSNHTSSNVQASSRKQGSNLPPPLEKYANSIDEQDSDMKTMISLGSGRRSVDPSYLSSHVISNYIKELQHQGSAAASEMEMEKLKHDYQRSMQMSNQWEKMYENLHQFCVKEMLDGGQARTLDDNDN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0247 418 MobiDBLite consensus disorder prediction 288 323 - -
Aed3g0247 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 137 180 IPR001680 GO:0005515
Aed3g0247 418 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 84 117 - -
Aed3g0247 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 84 117 IPR001680 GO:0005515
Aed3g0247 418 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 266 - -
Aed3g0247 418 MobiDBLite consensus disorder prediction 288 310 - -
Aed3g0247 418 PANTHER WD-REPEAT PROTEIN 18 17 403 IPR045227 -
Aed3g0247 418 Gene3D - 14 182 IPR015943 GO:0005515
Aed3g0247 418 PRINTS G protein beta WD-40 repeat signature 103 117 IPR020472 -
Aed3g0247 418 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Aed3g0247 418 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Aed3g0247 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 272 IPR001680 GO:0005515
Aed3g0247 418 PANTHER WD REPEAT-CONTAINING PROTEIN 18 17 403 - -
Aed3g0247 418 SUPERFAMILY WD40 repeat-like 48 282 IPR036322 GO:0005515
Aed3g0247 418 ProSitePatterns Trp-Asp (WD) repeats signature. 250 264 IPR019775 -
Aed3g0247 418 SMART WD40_4 224 263 IPR001680 GO:0005515
Aed3g0247 418 SMART WD40_4 37 74 IPR001680 GO:0005515
Aed3g0247 418 SMART WD40_4 130 171 IPR001680 GO:0005515
Aed3g0247 418 SMART WD40_4 174 212 IPR001680 GO:0005515
Aed3g0247 418 SMART WD40_4 77 116 IPR001680 GO:0005515
Aed3g0247 418 Pfam WD domain, G-beta repeat 228 263 IPR001680 GO:0005515
Aed3g0247 418 Pfam WD domain, G-beta repeat 79 116 IPR001680 GO:0005515
Aed3g0247 418 Pfam WD domain, G-beta repeat 136 171 IPR001680 GO:0005515
Aed3g0247 418 Gene3D - 183 341 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0247 Aed-Chr3 1799643 1803402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0247 14 274 U-box Gene Family AT2G33340 23.048 6.45e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0247 K14829 - gmx:100791195 716.072