Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0244 ATGGCTAGGTCTGCCAAAGGGCATCAAGATGAATTCGATGACGATGATGAAGAAGAAGAACTCTTAACTGCAAACACCTCTTCTTCCTCTCTCAACAAAGTGAAGGTGGATGAACCCAGCACGGGGAAGAGGGTGAACCCACATCGTTCAAAGCATTCAGAGACTGAGCAACGTAGAAGGAGCAAGATTAACGAAAGGCAAGCTTTAAAAAAAGAAGAAAAAAACATAAATTGGTTTCAAGTTCTGAGAGATCTCATACCTCAAAATGATCAAAAAAGAGATAAGGCGTCCTTCTTGTTGGAGGTTATTGAGTATATTCAGTTCCTACAAGAAAAATTACAAATTTATGAACAGACTTATGAAGGGTGGAATCAGGAGCCCACGAAATTAACTCCATGGAGAAATCATCACGGGCCTGCAGAAAACACTACAGATCCTTCTCAAGCTACACAAAATGGGTCTGTGGATGAGAAAAATAACAATGTCTCTCCATTGTTGCCGAAAAATGTACAGAACCTGATAGAGTCTGATTTCTCAATGACAACTATTCCGAAGGGCCACACCCCTGATTCAACTACCGAAGCAGTTCGACTGCCCATGCAAATGCGATTGGACATGTTTGATCCAGTTGTTAGCAGTGGTATGGCAACCCAACATCTGCTGGAATCTATATCTAATGTTAACATGCCTTCCCATACCCAGACTCAATTGTGGTTTAATAAACCAAACAAGGGCAACTTTATTCTTCCAGATAATGATACAATGAAGGAGCAGGAGGAGCTGGTGATTGAAAGTAGATCAGATAGCATCTCAAGTGCCTATTCCCAGGGAGTTTTAGATTCTCTCACGCAAGCACTGCACTCTTCTGGCGTAGATATGTCCCAGACTAATGTCTCAGTGCAAATTGATGTTGGTAGACGAGCAAATGCTGACTTGATCCCATCTGCATATACTTCAAAGATGAGAGTAAGAGGGATTGGGTGGATCGGTTCATTTTTGCCACATGCTGGTTAG 1014 0.4201 MARSAKGHQDEFDDDDEEEELLTANTSSSSLNKVKVDEPSTGKRVNPHRSKHSETEQRRRSKINERQALKKEEKNINWFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQTYEGWNQEPTKLTPWRNHHGPAENTTDPSQATQNGSVDEKNNNVSPLLPKNVQNLIESDFSMTTIPKGHTPDSTTEAVRLPMQMRLDMFDPVVSSGMATQHLLESISNVNMPSHTQTQLWFNKPNKGNFILPDNDTMKEQEELVIESRSDSISSAYSQGVLDSLTQALHSSGVDMSQTNVSVQIDVGRRANADLIPSAYTSKMRVRGIGWIGSFLPHAG 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0244 337 Coils Coil 106 126 - -
Aed3g0244 337 Coils Coil 52 72 - -
Aed3g0244 337 MobiDBLite consensus disorder prediction 127 165 - -
Aed3g0244 337 Gene3D - 46 131 IPR036638 GO:0046983
Aed3g0244 337 CDD bHLH_AtBIM_like 49 134 - -
Aed3g0244 337 PANTHER TRANSCRIPTION FACTOR BIM3 1 320 - -
Aed3g0244 337 MobiDBLite consensus disorder prediction 1 68 - -
Aed3g0244 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 138 IPR036638 GO:0046983
Aed3g0244 337 MobiDBLite consensus disorder prediction 37 68 - -
Aed3g0244 337 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 320 IPR044295 GO:0003700|GO:0006351|GO:0046983
Aed3g0244 337 Pfam Helix-loop-helix DNA-binding domain 77 110 IPR011598 GO:0046983
Aed3g0244 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 109 IPR011598 GO:0046983
Aed3g0244 337 SMART finulus 53 115 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0244 Aed-Chr3 1765407 1768720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0244 3 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 38.509 1.39e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed3g0244 HLH 9.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0244 - - gmx:100791730 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0244 3 1765407 1768720 Aed3g0244 3 1765407 1768720 ECH