Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0217 ATGTTGGAAGGAGAAGCAACGGGCACGTGGGCTCGCATGTGCGACACGTGCCGCTCGGCGACCTGCACCGTCTTTTGCCGCGCCCACAACGCCTACCTCTGCGCCACGTGCGACGCGCGCGTGCACGTATCGCTGACGTGGCACGAGCGCGTATGGGTGTGCGAGGCCTGCGAACGCGCCCCGGCGGCGTTCCTCTGCAAGGCCGACGCCGCCTCCCTCTGCGCCTCCTGCGACGCCGACATCCACGCCGCCAACCCCCTCGCCAGCCGCCACCACCGCGTCCCCATCCTCCCCATCGCCGCCAACGCCAACGACGACGACGACGACGCTGCTGACGTGGACGACGACGATGACGAAACCGCTTCGTGGCTCTTGCTCAACCCTGTGAAAGGTGCTAGTGTTCCCACTAACAACAATAACAATAACAATGGGTTCTTGTTTAATGGTGAGGTTGATGAGTATTTGGACCTTGTTGATAACTGTAACTCTTGTGGTGACACTAACCACTTCGCTGCTGCTGCTTCTGCTGCTACTACCGCTGATCACTACTCTCATCATCATCATTTCGGTGCTGTTTCTCACAAGAGTTACGCTGGAGACAGCGTGGTTCCAGTTCAACAGCACTTTCAGCTTGGCTTGGACTTTGACAACTCCAAAGCTGCCACCTTCAGTTACAATGCTTCTGTTAGTCAAAGTGTATCAGTTTCATCAATGGATATTGGTGTTGTGCCTGAATCACCAATGAGGGATGTCTCAATTGGGCATACAAGACCCCCCAAAGGGACAATTGACCTATTTTCTGGACCTCCCATTCAGGTGCCTTCACATTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGAGAGAAAAAGAAGACAAGAAAATTTGAGAAGACCATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACAAGACCCCGTATAAAAGGTCGATTCGCCAAGAGAACCGATGTAGAAGCTGAAGTGGATCAGATGTTCTCCACATCACTAATTACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1056 0.5341 MLEGEATGTWARMCDTCRSATCTVFCRAHNAYLCATCDARVHVSLTWHERVWVCEACERAPAAFLCKADAASLCASCDADIHAANPLASRHHRVPILPIAANANDDDDDAADVDDDDDETASWLLLNPVKGASVPTNNNNNNNGFLFNGEVDEYLDLVDNCNSCGDTNHFAAAASAATTADHYSHHHHFGAVSHKSYAGDSVVPVQQHFQLGLDFDNSKAATFSYNASVSQSVSVSSMDIGVVPESPMRDVSIGHTRPPKGTIDLFSGPPIQVPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTSLITEVGYGIVPSF 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0217 351 CDD Bbox1_BBX-like 53 96 - -
Aed3g0217 351 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 10 351 IPR045281 GO:0009909
Aed3g0217 351 ProSiteProfiles CCT domain profile. 282 324 IPR010402 GO:0005515
Aed3g0217 351 CDD Bbox1 13 42 - -
Aed3g0217 351 ProSiteProfiles Zinc finger B-box type profile. 9 53 IPR000315 GO:0008270
Aed3g0217 351 ProSiteProfiles Zinc finger B-box type profile. 49 96 IPR000315 GO:0008270
Aed3g0217 351 Pfam CCT motif 282 324 IPR010402 GO:0005515
Aed3g0217 351 Pfam B-box zinc finger 51 96 IPR000315 GO:0008270
Aed3g0217 351 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 10 351 - -
Aed3g0217 351 SMART bboxneu5 49 96 IPR000315 GO:0008270
Aed3g0217 351 SMART bboxneu5 9 46 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0217 Aed-Chr3 1583307 1585686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0217 1 351 C2C2-CO-like Transcription Factor Family AT3G02380 56.032 2.38e-131 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aed3g0217 zf-B_box 8.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0217 - - gmx:100301886 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0217 3 1583307 1585686 Aed3g0217 3 1583307 1585686 ECH