Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0188 ATGGCTCTGGACCAGCCCTCCAATCCCAACGCCGTTGACGGCACTGGTAACGGCGCGACGCCGTGCTCCGCCGCGGATGGCGGTGACGACGGGAGGCCGGTGGCGAGACTTCCGCGGTGGACGCGGCAGGAGATTCTGGTGCTTATTCAGGGAAAGAGTGACGCGGAGAGCCGGTTCAGACCGGGTCGGGGAAGCGGTTCGGCGTTCGGTTCGAGCGAACCGAAATGGGCGTTGGTGTCCTCGTATTGCAAAAAGCACGGCGTGAACCGGGAACCGGTGCAGTGCCGGAAGCGGTGGAGCAATCTCGCCGGCGATTATAAGAAGATCAAGGAGTGGGAGTCGCAGGTGAGGGACGAAGCGGAGTCGTTTTGGCTCATGAGGAACGATTTGAGGAGGGAGAGGAAATTGCCTGGGTATTTTGACAGGGAGGTGTATAATATTCTCGATTCGCCGTCGTCCACGGCTGCAGCTGCGGCGGCGGAAACTCCGGTGGCGGTTGCTGCGGGGGACGAGGAGGTGCACCTCTATGATAGTAATCGGAGGGTTGGGAGTGAGGATGGCTTGTTCTCGGATTCTGAGAAGGACGAGGTTTTGCTTTTAGCTTCTGCCAAGGATGTTCCTGCACCTGTTCCTATCTCAGAGAAGCAATATCAACCGCCCCTCCAAGTATGCGAAGGGGAAGGCAGTCCTCAAGGTTTAGCCAATGAGAAGCGGGCAACCCAAAATCCTGAAATGGGTTCAACATCTCAAGGGGAGCGGAAGAGGAAGCGGTTTGCAACAACCGATGGAGAGGAGGAAACTTTGCAAAGCCAATTAATTGGTGTCTTAGAAAAGAATGGCAAAATGCTACGTGATCAACTTGAAGCTCAGAACATGAATTTCCAGTTGGATCGCCAACAGCAGAAAGACACTGCAAGTAATATAGTTGCTGTACTTGACAAACTTGCAGATGCTCTAGGGAGAATTGCTGATAAATTGTAG 981 0.5433 MALDQPSNPNAVDGTGNGATPCSAADGGDDGRPVARLPRWTRQEILVLIQGKSDAESRFRPGRGSGSAFGSSEPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQVRDEAESFWLMRNDLRRERKLPGYFDREVYNILDSPSSTAAAAAAETPVAVAAGDEEVHLYDSNRRVGSEDGLFSDSEKDEVLLLASAKDVPAPVPISEKQYQPPLQVCEGEGSPQGLANEKRATQNPEMGSTSQGERKRKRFATTDGEEETLQSQLIGVLEKNGKMLRDQLEAQNMNFQLDRQQQKDTASNIVAVLDKLADALGRIADKL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0188 326 MobiDBLite consensus disorder prediction 52 73 - -
Aed3g0188 326 ProSiteProfiles Myb-like domain profile. 32 103 IPR001005 -
Aed3g0188 326 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 1 326 - -
Aed3g0188 326 MobiDBLite consensus disorder prediction 234 248 - -
Aed3g0188 326 Pfam Myb/SANT-like DNA-binding domain 39 126 IPR044822 -
Aed3g0188 326 Gene3D - 40 108 - -
Aed3g0188 326 MobiDBLite consensus disorder prediction 1 36 - -
Aed3g0188 326 MobiDBLite consensus disorder prediction 210 267 - -
Aed3g0188 326 CDD GT1 38 110 - -
Aed3g0188 326 MobiDBLite consensus disorder prediction 1 17 - -
Aed3g0188 326 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 326 - -
Aed3g0188 326 Coils Coil 284 304 - -
Aed3g0188 326 MobiDBLite consensus disorder prediction 249 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0188 Aed-Chr3 1383758 1387818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0188 39 111 Trihelix Transcription Factor Family AT1G33240 34.247 4.39e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aed3g0188 Myb_DNA-bind_4 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0188 - - gmx:100788594 602.053