Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0186 ATGCAATTCGCTAAGCTCGATGACTCTCCTATGTTCCGCAAGCAGATACAGTGCATGGAGGAAAGTGCTGAATCTTTAAGAGAGAGGGGTTTAAAATTTTACAAAGGATGTAGAAAATACACTGAAGGACTTGGGGAGGCCTATGATGGAGACATTGCATTTGCAAGTGCCCTAGAAACTTTTGGCGGTGGGCATAATGACCCAATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACCATAGCCTTAAGAGAAATAGGGACATATAAGGAAGTACTTCGATCACAGGTTGAGCATATGTTAAATGACAGATTGCTTCAGTTTGTCAATATGGATTTGCAAGAGGTCAAGGAAGCACGTAAACGTTTTGACAAGGCTAGCCTTACTTATGACCAGACTCGTGAAAGGTTTCTGTCTCTAAGAAAAGGCACAAAAACTGATGTAGCTGCTGCCCTAGAAGAGGAGCTTCATAGTGCAAGATCTATGTTTGAGCAAACTCGGTTTAATCTGGTTACTGCCTTGTCAACTGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGGTATGAATTGTTGCACCAAATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGGGAAAGGTCCAATTATGAGCAGGCAGCTCTAAATGAAAGAATGCAAGAGTACAAGCGACAGATTGATCGGGAGAGTAGGTGGGCTTCAAACGGTTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCTCATAAGATGATAGAGGCAGTTATGCAATCTGCTGCTAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGATTTTTTGTTCTTGATAGTCGTGGAATGCTGTATTACTACCGTAAACAGTGCAGCAAATCATCTGGGTCTAGTAGTCAACATTCTGGCCAGAGGAATAGTTCCGAGCTTGGTTCTGGTCTTTTAAGTCGATGGCTGTCTTCTCATCATCACGGTGGGGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACTTGCTTACATCAACAATTAAAGTAGATGCTGACCAATCAGATTTAAGGTTTTGCTTCCGGATCATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGAAAGGCCAATAGATGTGTTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGTGGTGCTCCTGAACCTGATTGGGCATCATTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAAGGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCTAACTCAGTCTGGGAGGAATTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTGCAGGCTTAAGCAAATCTGATAAACCGCTGATGTTCTTCATCACCAAACCTTGTCAATCTGATTCTCTATCGGTGAAGGAAAAGTTCATCCATGCAAAGTATGCTGAGAAGCTTTTTGTTCGCAAGCCAAAGGACAATCAATACCGTCTCTTGGTAGCACAACAGATCTGGGAGGCTGTTCATGCTAATGATAAAAAAGCTGTATACCGTTACATTGTTAATTCTGACATTGATGTTAATGCTGTTTATGAGCCAACATGCAGCAGCTCCTTAACCCTTGCCAAAGTAATGCTATTACAAGAGCAGACTGGCCATGATCACAGCTCTACTTTAGCAGGGAACACATTGGACTGGTCCTCCACTAAAGAAGGCCAGGTCATGGACAATTTAGATGGGTGCACCCTACTTCATCTCGCATGTGAAACTGCAGATATTGGCATGGTGGAGCTCCTCCTACAGTATGGTGCAAATGTTAATGCAGCTGATTCGAGAGGTCAAACACCATTACATCGCTGTATTCTCAAAGGAAGATCTACATTTGCAAGATTATTGCTTTCTAGGGGAGCCGATCCTCGAGCTGTGGATGAGCAGGGAAGAACCCCTATTGAGCTTGCTGCAGAGTCAAATGCTGGTGGTGACAGAGAAGTCCATGCTCCATTGACTGATTCTAATGGATGA 2283 0.4271 MQFAKLDDSPMFRKQIQCMEESAESLRERGLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNMDLQEVKEARKRFDKASLTYDQTRERFLSLRKGTKTDVAAALEEELHSARSMFEQTRFNLVTALSTVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVPAGLSKSDKPLMFFITKPCQSDSLSVKEKFIHAKYAEKLFVRKPKDNQYRLLVAQQIWEAVHANDKKAVYRYIVNSDIDVNAVYEPTCSSSLTLAKVMLLQEQTGHDHSSTLAGNTLDWSSTKEGQVMDNLDGCTLLHLACETADIGMVELLLQYGANVNAADSRGQTPLHRCILKGRSTFARLLLSRGADPRAVDEQGRTPIELAAESNAGGDREVHAPLTDSNG 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0186 760 Gene3D - 582 755 IPR036770 -
Aed3g0186 760 PANTHER CENTAURIN/ARF 1 438 IPR045258 GO:0005096
Aed3g0186 760 Pfam BAR domain of APPL family 6 232 - -
Aed3g0186 760 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Aed3g0186 760 SMART arf_gap_3 437 582 IPR001164 GO:0005096
Aed3g0186 760 MobiDBLite consensus disorder prediction 248 270 - -
Aed3g0186 760 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Aed3g0186 760 CDD PH_ACAP 295 432 - -
Aed3g0186 760 SUPERFAMILY PH domain-like 293 439 - -
Aed3g0186 760 SUPERFAMILY ArfGap/RecO-like zinc finger 438 577 IPR037278 -
Aed3g0186 760 MobiDBLite consensus disorder prediction 726 760 - -
Aed3g0186 760 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 438 - -
Aed3g0186 760 ProSiteProfiles Ankyrin repeat profile. 666 698 IPR002110 GO:0005515
Aed3g0186 760 Pfam PH domain 294 427 IPR001849 -
Aed3g0186 760 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 437 748 - -
Aed3g0186 760 MobiDBLite consensus disorder prediction 253 269 - -
Aed3g0186 760 Pfam Putative GTPase activating protein for Arf 440 577 IPR001164 GO:0005096
Aed3g0186 760 PANTHER CENTAURIN/ARF 437 748 IPR045258 GO:0005096
Aed3g0186 760 Pfam Ankyrin repeats (many copies) 686 740 IPR002110 GO:0005515
Aed3g0186 760 Coils Coil 118 138 - -
Aed3g0186 760 Gene3D - 285 434 IPR011993 -
Aed3g0186 760 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Aed3g0186 760 Coils Coil 227 247 - -
Aed3g0186 760 SUPERFAMILY Ankyrin repeat 595 744 IPR036770 -
Aed3g0186 760 CDD ArfGap 440 569 - -
Aed3g0186 760 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Aed3g0186 760 SMART ANK_2a 666 695 IPR002110 GO:0005515
Aed3g0186 760 SMART ANK_2a 699 728 IPR002110 GO:0005515
Aed3g0186 760 ProSiteProfiles Ankyrin repeat profile. 699 731 IPR002110 GO:0005515
Aed3g0186 760 ProSiteProfiles Ankyrin repeat region circular profile. 666 697 - -
Aed3g0186 760 ProSiteProfiles ARF GTPase-activating proteins domain profile. 437 582 IPR001164 GO:0005096
Aed3g0186 760 CDD BAR_SFC_plant 14 215 IPR035670 -
Aed3g0186 760 PRINTS HIV Rev interacting protein signature 468 485 IPR001164 GO:0005096
Aed3g0186 760 PRINTS HIV Rev interacting protein signature 449 468 IPR001164 GO:0005096
Aed3g0186 760 PRINTS HIV Rev interacting protein signature 491 512 IPR001164 GO:0005096
Aed3g0186 760 SMART PH_update 293 430 IPR001849 -
Aed3g0186 760 Gene3D Arf GTPase activating protein 435 581 IPR038508 -
Aed3g0186 760 ProSiteProfiles Ankyrin repeat region circular profile. 699 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0186 Aed-Chr3 1371767 1381162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0186 449 576 C2H2 Transcription Factor Family AT4G21160 41.860 1.78e-20 91.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0186 3 1371767 1381162 Aed3g0186 3 1371767 1381162 ECH