Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0178 ATGGCAGCAGCGTTCCAGGAAGCTGGCGGCGGCGGCGGCGGCGGTGGTGGCGCTGACGACGACGCGACCATCGACGTGCACACCACTCTCGGAACTCCCATCCGCTACCTCCCCCTCGACCACCTCTACTCCGCCACCTCACCCTGCCGCGTCACCGCCAGCGGCTCCTCCAACGTCATGTCCAAAAAAATCAAAGCTCGCAAACTCACCCCCTTAGCGCATCATTTCAACAACAACAACAGCAACAACCACGACCAGAAGAAAACGACGTCGTCTTCTTCTCAACTTTCTCCAAAGCCCCCTCTCCTCTTCGTCTACTCGCGCCGGCGCAAGAGCCATTCCCTTTCCGCGACGCCGCCGTTTCACGAAGGCGCCGAGAACGAGAGCGAGAAGAGGTTGCTGAAGAAGAGGAAAATTGGGAGCACTGAGTTGGAGAGGCTGGGCGTGGATTTGAACACCGCGATTGGGGATGTTGACGGGCCTCGATTGAGGGAATGCAGAAATCAATCTGGGAATTCTGGTGCTGCTGGGAATGCTAAGTGTGGTTCCTTGGAGAATTTGCCCAAAGTGTTGTCTGAATCTCGCAATGTGAAGAAATGGGCCGGGTTGAGTTTTGATAATGCTGATCCCGAAGCGTTTATTGGATTACGATGCAAGGTTCATTGGCCCATGGATTTAAAAGCATACACTGGCTATGTCAGAAGTTTTGATAAGGAAACTAAGATACATCATGTCAAGTATGATGATGGTGATGAGGAAAATTTAATTCTTTCAAATGAAAATATAAGATTCCATGTTTCCCGCGATGAGATGAAACGCTTAAAATTGAATTTTGCCAAAGTTCGTGACAATAATGTCTCTGATTATGATGTTGAAGAGATGCTTGCTTTAGCTGCAAGTTTGGATGATTGTCAAGACTTCGAGCCTGGGGATATCATATGGGCCAAGCTAACAGGTCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCTAGCAACTGTAAGGGTTTAAAGATGTTTCTGGGAGGAAGATCAGTCCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAAGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTACACTCAAAATGCAAGAAACATAGTTTTATTGAAGGTTTAGAAGAGGCAAAAAGATATTTAAGTGAACAGAAGCTTCCACTGGAGATGCTAGAGTTGCAGAAACGATGCACTGCTGATGACTGTAACAATGTAAGTGGAGAGGATGGAGGATGTACAGATTCTGGTGATGATTGTTTAAATGACAAGGGGACTTTGATGGCTCTGGAAACCATTGAAACTTTTCCATATGAAGTTGGAGACCTCCAAATTCTAAGCCTTGGAAAAATAGTTGAAGATTCTGCATTCAGGGATGGAAGATTCATCTGGCCTGAAGGGTACACGGCAGTGAGGAAGTTTACTTCGGTTACTGACCCTAAAGTTTCTGCTCCTTATAAGATGGAGGTGTTGAGAGATCCAGAATCCAAAGTTCGTCCTCTGTTTAGAGTGACAGTTGATGGTGGTGAGCAGATAAAGAAAATGGAAAAGGATGCTTCTGAAGATACTTTTGCTGAAGGCGGGGTAGAAAAGGGCTACGAATCTGGGTCTGATATGTTTGGTTTCTCCAATCCTAAAGTAGTTAAACTTATACAGGGATTGTCTAAATCCAAAATCTCTTCGAAGAACTCAATTTGCAAGTCAGGTTCCAGAAGATCTAAGAATAACTTGCCTCTTGGTTATAGACAAGTTCATATTAACTGGTTTGACCTTGATAAGTGCAATGTGTGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGGGAACTGGAACCTGTTAATGGGGTGCTATGGTTATGCAACTTATGTCGTTCAGGCGCTCCTCCTCCACCTTGCTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCCATTGATGGTTTGAGTAGAATCAGTAAGGATCGCTGGAAGTTGTTATGCAGCATATGCGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAATAATTCTTGTCGGGTAGCATATCATCCACTCTGTGCACGCGCTGCTGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGGCTCTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATACGCTTACTTTCTTTCTGCAAGAAACATAGGCAACCATCTAATGAACATTCTGTTGCTGATGAACGTATAGTTGGAGTTGTTGGTCTATGTTCAGACTATGAACCACCGCCCAATCCGTCTGGTTGTGCTCGAAGTGGTATGATATTGCACACTTGTTTTACTAAAACAAATTCTTGGGCTTCATGTTCCCTTTATTTGGCCTTTTTAACAGTTTTTATAAATTATTCAACTTCTATTTTTAAGATAAATTTATTAAACAAGGTCTGTCTTTATTCTTGGGCAGAGCCATATGATTACTTTGGCAGGAGAGGTCGAAAAGAACCTGAAGCACTTGCAGCTGCGTCGTTGAAACGCTTGTTTGTGGAGAATCAACCTTATTTAGTGGGTGGATACTGCCAGCATGGTTCATTAAACAACCTAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGTAGCCAACAAAGGCTGAGAACCTCTCTGATTGACACATCAAACAGCATACTTTCTATCTCTGAAAAATATACGTACATGAGGGAAACCTTTCGGAAACAGCTGGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCGTATAAAGGTGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCACCTATAGCTGACCGTAGAGAGCACTTCATATACAATTCGTTGGTGGGTGCTGGAACATATATGTTTCGTATCGATGATGAACGAGTCATTGATGCTACCAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCACCAAATTGCTATTCCAGAGTTATAAGTGTTAATGGCGATGAGCATATTATAATATTTGCGAAGAGGGACATTAAACAGTGGGAAGAGCTTACATATGATTACAGATTTTTCTCAATTGATGAACGACTTGCATGTTACTGTGGCTTCCCAAAGTGCCGAGGTATAGTAAATGATACTGAGGCAGAAGAACGTGCCGCTACCCTCTATGCACCGCGAAGCGAATTAATAGATTGGAGAGGAGAATGA 3372 0.4398 MAAAFQEAGGGGGGGGGADDDATIDVHTTLGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKIKARKLTPLAHHFNNNNSNNHDQKKTTSSSSQLSPKPPLLFVYSRRRKSHSLSATPPFHEGAENESEKRLLKKRKIGSTELERLGVDLNTAIGDVDGPRLRECRNQSGNSGAAGNAKCGSLENLPKVLSESRNVKKWAGLSFDNADPEAFIGLRCKVHWPMDLKAYTGYVRSFDKETKIHHVKYDDGDEENLILSNENIRFHVSRDEMKRLKLNFAKVRDNNVSDYDVEEMLALAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESLASNCKGLKMFLGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLSEQKLPLEMLELQKRCTADDCNNVSGEDGGCTDSGDDCLNDKGTLMALETIETFPYEVGDLQILSLGKIVEDSAFRDGRFIWPEGYTAVRKFTSVTDPKVSAPYKMEVLRDPESKVRPLFRVTVDGGEQIKKMEKDASEDTFAEGGVEKGYESGSDMFGFSNPKVVKLIQGLSKSKISSKNSICKSGSRRSKNNLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHSVADERIVGVVGLCSDYEPPPNPSGCARSGMILHTCFTKTNSWASCSLYLAFLTVFINYSTSIFKINLLNKVCLYSWAEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLNNLEPSGRGVCSKFFCSQQRLRTSLIDTSNSILSISEKYTYMRETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERAATLYAPRSELIDWRGE 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0178 1123 ProSitePatterns Zinc finger PHD-type signature. 609 654 IPR019786 -
Aed3g0178 1123 Gene3D SET domain 913 1111 IPR046341 -
Aed3g0178 1123 Pfam SET domain 970 1076 IPR001214 GO:0005515
Aed3g0178 1123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 600 654 IPR013083 -
Aed3g0178 1123 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 24 1120 - -
Aed3g0178 1123 ProSiteProfiles FYR domain FYRC motif profile. 512 582 IPR003889 GO:0005634
Aed3g0178 1123 PANTHER PHD FINGER PROTEINS 24 1120 - -
Aed3g0178 1123 MobiDBLite consensus disorder prediction 73 100 - -
Aed3g0178 1123 Pfam PWWP domain 310 397 IPR000313 -
Aed3g0178 1123 ProSiteProfiles PWWP domain profile. 309 372 IPR000313 -
Aed3g0178 1123 SUPERFAMILY Tudor/PWWP/MBT 303 404 - -
Aed3g0178 1123 SMART PWWP_4 307 370 IPR000313 -
Aed3g0178 1123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 786 IPR013083 -
Aed3g0178 1123 Pfam F/Y-rich N-terminus 456 505 IPR003888 GO:0005634
Aed3g0178 1123 SUPERFAMILY SET domain 957 1096 IPR046341 -
Aed3g0178 1123 Pfam PHD-zinc-finger like domain 662 783 - -
Aed3g0178 1123 Gene3D - 451 574 - -
Aed3g0178 1123 MobiDBLite consensus disorder prediction 1 20 - -
Aed3g0178 1123 ProSiteProfiles Zinc finger PHD-type profile. 606 657 IPR019787 -
Aed3g0178 1123 SMART set_7 959 1083 IPR001214 GO:0005515
Aed3g0178 1123 Gene3D - 213 265 - -
Aed3g0178 1123 ProSiteProfiles Post-SET domain profile. 1083 1099 IPR003616 -
Aed3g0178 1123 ProSiteProfiles SET domain profile. 959 1077 IPR001214 GO:0005515
Aed3g0178 1123 ProSiteProfiles Extended PHD (ePHD) domain profile. 660 784 IPR034732 -
Aed3g0178 1123 SMART PHD_3 718 784 IPR001965 -
Aed3g0178 1123 SMART PHD_3 608 655 IPR001965 -
Aed3g0178 1123 CDD ePHD_ATX1_2_like 669 783 IPR041956 -
Aed3g0178 1123 Gene3D - 297 408 - -
Aed3g0178 1123 CDD PHD_ATX1_2_like 608 654 IPR042010 -
Aed3g0178 1123 CDD SET_SETD1-like 947 1095 - -
Aed3g0178 1123 ProSiteProfiles FYR domain FYRN motif profile. 450 508 IPR003888 GO:0005634
Aed3g0178 1123 Pfam PHD-finger 621 655 - -
Aed3g0178 1123 SUPERFAMILY FYVE/PHD zinc finger 600 670 IPR011011 -
Aed3g0178 1123 SMART fyrn_3 464 508 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0178 Aed-Chr3 1297809 1308578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0178 609 754 C2H2 Transcription Factor Family AT3G14740 39.735 8.85e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed3g0178 zf-HC5HC2H_2 3.2e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0178 - - gmx:100808923 1977.6