Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0166 ATGGCTACGCCTACCACTACTGCTAGATCTTTTCTCCAAGTCGCCGCTACGGAGGAGGCTGCGCCGCCTCTTAGAGTCGTCCAGATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCGCCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGGTGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGATGGTACCAGTCTACATTGCTTGGCTCCTTCCAGACTGTGGAGCTTATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGAACAAGGTGTTCTAGCTCTGAAGGCCTTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTACTGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCAATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACAGAGCTGGAACCTGATACTCCAGTCACCCAGTGCGATTATGATCGTCTGCAATTGTCAACCAGTTCATTAATGGAGAGGAATACAGAATTTTTAATTGAATGCATGGATGACTTGTCACTAGAACAACAAAAGTTCCAATTCCACTATCGGAGCTTGTCTCGGCAACAAGCTCAGCAGCAAGCATGGCTTCAAAAGAGAAGGGCGGAGAACATGGCTCGTAAAGCTGCTGGAGAAGAACCTTTGCCGGAGGAAGATCCTTCAAATCCCATTTTCAAGCCACTCCCGGAGCCATCACGGTTGGAAAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAACCAAATCAATGGGGTGTCAGGGCAGAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGAGGATTGA 1020 0.4441 MATPTTTARSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSEQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNTEFLIECMDDLSLEQQKFQFHYRSLSRQQAQQQAWLQKRRAENMARKAAGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0166 339 ProSiteProfiles MPN domain profile. 27 160 IPR037518 -
Aed3g0166 339 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 5 338 - -
Aed3g0166 339 Gene3D Cytidine Deaminase, domain 2 2 216 - -
Aed3g0166 339 SMART pad1_6 26 159 IPR000555 GO:0005515|GO:0008233|GO:0008237
Aed3g0166 339 Pfam C-terminal region of eIF3h 145 338 IPR045810 -
Aed3g0166 339 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 25 128 IPR000555 GO:0005515|GO:0008233|GO:0008237
Aed3g0166 339 MobiDBLite consensus disorder prediction 270 284 - -
Aed3g0166 339 CDD MPN_eIF3h 25 288 IPR027524 GO:0003743|GO:0005737|GO:0005852
Aed3g0166 339 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 22 339 IPR027524 GO:0003743|GO:0005737|GO:0005852
Aed3g0166 339 MobiDBLite consensus disorder prediction 268 296 - -
Aed3g0166 339 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 5 338 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0166 90 339 Eukaryotic Initiation Factors Gene Family AT1G10840 83.600 1.29e-156 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0166 K03247 - gmx:100795273 655.595