Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0150 ATGAAAGATTTGTGCATCCAATCCATGGCTTCTTCACTTGGTCGAAGAAGAACCCAGGCTCCCAAATCATCCCCCACCCTAAACGACGACGTTTCCTGCGAAGAATGCGGCGGAGGCCACTCCCCTGCGAAGCTTCTTCTCTGCGACAAATGCGACAGAGGCTACCACCTTTTCTGCCTCAGCCCCAACCTCCCCTCGGTCCCCAAAGGCTCTTGGTTCTGCCCCTCCTGCTCCAATCACAAACCCAAGTCTTTCCCCCTTGTCCAGACCAAAATCATCGACTTCTTCCGCATCCAGCGCTCCCCGGAGGCGTTGCCGAATCAAGACACGCGGAAGAAGCGAAAGCGGGGTAGGGGATTAGTGCTCTCGAAGAAGAAGAGGAAGCTGTTGGCGTTCATGCCGAGCGAGGATTCAAATAGGAGATTGGAGCAGATGGCGTCGCTGGCCACGGCGCTGACCGCGACTAAAACGGAGTTCAGAAATGAGCTTACTTACATGTCTGGAATGGCGCCTAGGTCCGCTAATTGCCCTGCTCTCGAGCGCGAAGCAGATAGATCCATCAAAGATTTAACCATAATAACAGAATATGTTGGAGACGTGGACTTTTTAAAGAACAGGGAAAATGATGATGGAGATAGCATAATGACACTTCTCTCAGCTTCTGATCCTTCAAAGACGCTTGTCATATGTCCAGACAAACGAAGCAACATAGCTCGATTTGTTAACGGCATCAATAATCATACACCGGAAGGGAAAAAGAAGCAGAACTTAAAATGCGTGAGGTTTAATGTCGGAGGTGAATGTCGGGTTCTTTTAATCGCCAATAGAGATATTACAAAGGGGGAAAGGTTGTACTACGACTACAACGGAGATGAACATGAATATCCAACTGAACATTTTGTATGA 906 0.4879 MKDLCIQSMASSLGRRRTQAPKSSPTLNDDVSCEECGGGHSPAKLLLCDKCDRGYHLFCLSPNLPSVPKGSWFCPSCSNHKPKSFPLVQTKIIDFFRIQRSPEALPNQDTRKKRKRGRGLVLSKKKRKLLAFMPSEDSNRRLEQMASLATALTATKTEFRNELTYMSGMAPRSANCPALEREADRSIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSKTLVICPDKRSNIARFVNGINNHTPEGKKKQNLKCVRFNVGGECRVLLIANRDITKGERLYYDYNGDEHEYPTEHFV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0150 301 CDD PHD_RSF1 33 77 - -
Aed3g0150 301 ProSiteProfiles SET domain profile. 43 289 IPR001214 GO:0005515
Aed3g0150 301 SMART PHD_3 32 78 IPR001965 -
Aed3g0150 301 Pfam PHD-finger 33 79 IPR019787 -
Aed3g0150 301 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 182 298 - -
Aed3g0150 301 SUPERFAMILY FYVE/PHD zinc finger 23 84 IPR011011 -
Aed3g0150 301 PANTHER HISTONE ACETYLTRANSFERASE 15 179 - -
Aed3g0150 301 CDD SET_ATXR5_6-like 182 301 - -
Aed3g0150 301 SUPERFAMILY SET domain 183 292 IPR046341 -
Aed3g0150 301 ProSiteProfiles Zinc finger PHD-type profile. 30 80 IPR019787 -
Aed3g0150 301 ProSitePatterns Zinc finger PHD-type signature. 33 77 IPR019786 -
Aed3g0150 301 Gene3D SET domain 113 301 IPR046341 -
Aed3g0150 301 PANTHER HISTONE ACETYLTRANSFERASE 182 298 - -
Aed3g0150 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 92 IPR013083 -
Aed3g0150 301 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 15 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0150 Aed-Chr3 1109261 1111412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0150 20 93 C2H2 Transcription Factor Family AT3G01460 33.766 1.58e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed3g0150 PHD 8.6e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0150 K24406 - gmx:100791762 515.383