Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0143 ATGATGGTATCGAGAGGATTGTTCGGATGGTCCCCGCCGCACGTGCAACCTCTCACGCCGGTTTCGGAGGTTTCCGAGCCTCCGGAGTCGCCTTCGCCGTACCTGGACCCCGGCGCCGAGACCTCCGCGTCGCAGCAGGTGGAGGCGGAGGAGGAGATGGAGGAGCCGGAGGATATCGAGCCGCCGCCCGCCGCGGTTCCGTTTTCGCAGCTCTTCGCATGCGCCGACCGCTTCGATTGGTTCCTCATGGCCGTGGGTTCCGTCGCAGCCGCGGCTCACGGCACTGCGCTCGTCGTTTACTTGCACTACTTCGCGAAGATCATCCACGTGCTGCGGATGGATCCTTTGAACGGCACATCTCAGGAGCAGTTTGACAGGTTCACCGAGCTTGCTTTAATCATTGTTTATATTGCTGCGGGAGTTTTCGTTGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACGGGAGAACGGCAGACTGCTGTCATCAGGTCAAAATATGTTCAAGTACTACTAAATCAAGATATGAGTTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTAAGCGATGTGCTGCTTATCCAGTCCGCCCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCCTTATCAATTGTTGGCAGATTGCTTTGATAACGTTAGCTACGGGTCCATTTATTGTTGCTGCTGGAGGAATATCAAACATATTCCTTCATAGGCTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTTTCTTATATCAGGACATTGTATGCATTTACAAATGAAACTTTGGCCAAGTATTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACGTATGGATTAGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGATTCTTGGTTATTCATGGAAAAGCGCATGGTGGTGAAATTATAACAGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCGACAAATTTCTACTCGTTCGATCAGGGACGAATAGCTGCTTATAGACTATTTGAGATGATAACTCGGTCATCCTCATCTGTTAATCATGATGGCACTGCCCCTGATTCTGTGCAAGGAAATATAGAGTTCCGGAATGTTTATTTCAGCTATTTGTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTGCCTGCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACGTTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTGGAATGGCTGAGGAGTCAAATAGGACTAGTCACCCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGATGCCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCTCATACATATATCAGCTCATTAGAGAAAGGTTATGAGACACAGGTCTTAATTTCCAAAACTGGTGCTCCTGGCTTTCAGGTTGGCAGGGCTGGTCTAGCTTTGACCGAAGAGCAGAAAATAAAACTTTCTATTGCTAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCAGGGGGCTCTGGATTTGCTTATGTTGGGACGCTCAACAATAATAATTGCTCGGAGGCTCAGTCTCATAAAGAATGCTGACTATATTGCTGTTATGGAGGAAGGTCAGCTTGTTGAAATGGGTACTCATGATGAATTATTAACCCTGGATGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCAGCAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAAACTGCAGCCTTCCAGATTGAGAAGGATTCTTCAAGTCATAGCTTCAAAGAACCATCATCCCCTAAAATGATGAAGTCACCCTCTCTTCAAAGAGTTTCGAATGTATCCCGACCTCCAGATGGTGTCTTTAACTTGCAAGAATCGCCAAAAGTCCGGAGCCCACCACCTGAGAAGATGCTTGAAAATGGCCAGGTGTTCAATGCAGCAGATAAGGAACCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGATTGCCAGAGTTACCCAAGATTGATGTTCATTCTGTGCATCGACAAATGTCTAATGATTCTGATCCGGAGTCTCCCGTTTCACCTCTTTTAACATCTGATCCTAAAAGTGAACGCTCCCATTCACAGACTTTTAGTAGACAACATAGTCATTCCGATGATGTCTCAGTTAAAATGAGAGAAACAAAGGGTGCACGGCATCAAAAACCACCATCACTGCAGAAGCTGGCTGAGCTTAGTTTTGCTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGAGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCTTATGTTATTGGTCTTGTGGTGACAGCTTACTATAGAATTGATGACACCCATCACCTTGAACGGGAGGTAGACAGGTGGTGCTTGATCATTGCCAGCATGGGTATTGTGACAGTAGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGAGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGCAGGATGGTTTGATGATGAAGAAAACAGTGCTGACAATTTGTCCATGCGATTGGCCAATGATGCTACTTTTGTGCGAGCTGCTTTTAGCAACAGGCTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGTCTTCTCATTGGTGCTTTGCTACACTGGCGGTTAGCACTTGTGGCTTTTGCAACCCTTCCAATTCTCTGTGTTTCTGCCATTGCTCAGAAATTTTGGCTTGCTGGATTTTCAAGGGGCATTCAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGGAACATTTACACTGTTGTTGCTTTTTGTGCTGGTAATAAGGTAATGGAGCTCTACAGGCTGCAACTAAAGAAAATATTTAAGCAGAGCTTTCTTCATGGGATGGCAATTGGTTTTGCATTTGGCTTTTCACAGTTTCTACTTTTTGCCTGTAATGCCCTGCTACTTTGGTACACTGCAATATGTATACAACGTGGTTACATGGATCCACCTACCGCACTCAAGGAGTACATGGTTTTCTCATTTGCAACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAACGACGAAAATCTCTCATATCAGTGTTTGAAATTATAGATCGTGTGCCTAAAATTGATCCTGATGATAGCTCAGCATTGAAGCCACCCAATGTATATGGAAGTATCGAGTTAAAAAATGTTGATTTTTGTTATCCATCTCGTCCTGAAGTGTTGGTATTGAGCAATTTTAGCCTCAAAGTCACTGGGGGCCAAACAGTTGCTATTGTGGGAGTTTCTGGGTCAGGAAAGAGCACTATAATATCTTTGATTGAGAGGTTTTATGATCCAGTTGCGGGCCAAGTTTTCCTGGATGGTAGGGATTTAAAGCAATATAATTTGAGATGGTTGAGGAACCACCTTGGTCTTGTTCAGCAGGAACCTATTATCTTCTCAACAACCATAAGGGAAAACATTATATATGCAAGGCATAATGCCACTGAATCTGAGATGAAAGAGGCTGCTAGAATAGCAAATGCTCATCATTTCATTAGCAGCTTGCCTCATGGTTATGACACTCATGTTGGGATGAGAGGTGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCTAGGGTAGTGCTGAAAAATGCCCCTATCTTATTGTTGGATGAAGCTAGTTCATCAATTGAATCTGAGTCAAGCCGAGTAGTGCAAGAGGCTCTAGACACGCTAATAATGGGAAACAAGACCACTATTTTAATAGCGCATAGGGCTGCAATGATGAGGCATGTGGACAATATTGTAGTGCTTAATGGAGGACGGATAGTGGAGGAGGGCAGTCATGATTCATTGGTAGCAAAGAATGGTTTGTATGTACGACTGATGCAACCACATTTTGGTAAGGCTTTGCGTCACCATCGGCTTGTTTAA 4245 0.4349 MMVSRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPGAETSASQQVEAEEEMEEPEDIEPPPAAVPFSQLFACADRFDWFLMAVGSVAAAAHGTALVVYLHYFAKIIHVLRMDPLNGTSQEQFDRFTELALIIVYIAAGVFVAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMITRSSSSVNHDGTAPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATMDQIEEAAKIAHAHTYISSLEKGYETQVLISKTGAPGFQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQGALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEAAKLPKRMPVRNYKETAAFQIEKDSSSHSFKEPSSPKMMKSPSLQRVSNVSRPPDGVFNLQESPKVRSPPPEKMLENGQVFNAADKEPSIRRQDSFEMRLPELPKIDVHSVHRQMSNDSDPESPVSPLLTSDPKSERSHSQTFSRQHSHSDDVSVKMRETKGARHQKPPSLQKLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDDTHHLEREVDRWCLIIASMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEAGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGALLHWRLALVAFATLPILCVSAIAQKFWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIQRGYMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVTGGQTVAIVGVSGSGKSTIISLIERFYDPVAGQVFLDGRDLKQYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNATESEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFGKALRHHRLV 1414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0143 1414 CDD ABC_6TM_Pgp_ABCB1_D2_like 837 1148 - -
Aed3g0143 1414 Gene3D - 1163 1402 IPR027417 -
Aed3g0143 1414 Gene3D ABC transporter type 1, transmembrane domain 780 1011 IPR036640 GO:0005524|GO:0016021
Aed3g0143 1414 Gene3D ABC transporter type 1, transmembrane domain 1014 1162 IPR036640 GO:0005524|GO:0016021
Aed3g0143 1414 SUPERFAMILY ABC transporter transmembrane region 71 382 IPR036640 GO:0005524|GO:0016021
Aed3g0143 1414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 653 IPR027417 -
Aed3g0143 1414 Pfam ABC transporter transmembrane region 847 1111 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed3g0143 1414 Pfam ABC transporter transmembrane region 86 357 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed3g0143 1414 Gene3D - 397 656 IPR027417 -
Aed3g0143 1414 MobiDBLite consensus disorder prediction 773 793 - -
Aed3g0143 1414 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1165 1402 IPR003439 GO:0005524
Aed3g0143 1414 SMART AAA_5 1192 1379 IPR003593 -
Aed3g0143 1414 SMART AAA_5 434 625 IPR003593 -
Aed3g0143 1414 Gene3D ABC transporter type 1, transmembrane domain 70 671 IPR036640 GO:0005524|GO:0016021
Aed3g0143 1414 Pfam ABC transporter 428 584 IPR003439 GO:0005524
Aed3g0143 1414 MobiDBLite consensus disorder prediction 687 712 - -
Aed3g0143 1414 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Aed3g0143 1414 Pfam ABC transporter 1183 1331 IPR003439 GO:0005524
Aed3g0143 1414 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 19 1410 - -
Aed3g0143 1414 MobiDBLite consensus disorder prediction 1 60 - -
Aed3g0143 1414 PANTHER ABC TRANSPORTER B FAMILY 19 1410 - -
Aed3g0143 1414 SUPERFAMILY ABC transporter transmembrane region 829 1150 IPR036640 GO:0005524|GO:0016021
Aed3g0143 1414 MobiDBLite consensus disorder prediction 678 744 - -
Aed3g0143 1414 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 842 1134 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed3g0143 1414 MobiDBLite consensus disorder prediction 794 822 - -
Aed3g0143 1414 Coils Coil 253 273 - -
Aed3g0143 1414 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 654 IPR003439 GO:0005524
Aed3g0143 1414 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 374 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed3g0143 1414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1154 1401 IPR027417 -
Aed3g0143 1414 MobiDBLite consensus disorder prediction 768 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0143 Aed-Chr3 1048679 1057532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0143 53 710 Calmodulin-binding Proteins AT2G36910 42.771 2.60e-162 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0143 K05658 - gmx:100779000 2574.66