Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0139 ATGGCGAATTGTTTGATGTTGCTTTCTCGTGGAAGTGAGTTTGAGGCCACCTACTCATCAAGCACTTCAATGATAAGCAACCGTGTGTTTGAGTGCAAGACATGTAATAGGCAATTCTCTTCATTTCAGGCACTTGGTGGCCACAGGGCTAGTCACAAGAAGCCAAGGTTGATGGCAGGAGATAATAATATTGAAGGCCAATTGCAGCAACTTCATGATTCTGATTCACCCCCAAAGCCTAAGACTCATGAGTGTTCCATTTGTGGCTTGGAGTTTGCTATAGGGCAAGCCTTGGGAGGCCACATGAGGAGGCATAGAGCTTCCAATTTGAATGGAAACGTCCACAATTCGACTACGACTACTATCAGTAGTAGTAGTGGTGGTGGTAGCAGTTTTGATTCTTCACCAAACAAGAGACTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGGTTTTGAAGATCGGAAAGCCAACCACTTTTGTTGATTATTTGTATTGA 513 0.4288 MANCLMLLSRGSEFEATYSSSTSMISNRVFECKTCNRQFSSFQALGGHRASHKKPRLMAGDNNIEGQLQQLHDSDSPPKPKTHECSICGLEFAIGQALGGHMRRHRASNLNGNVHNSTTTTISSSSGGGSSFDSSPNKRLLVLDLNLTPFENDLEVLKIGKPTTFVDYLY 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0139 170 PANTHER ZINC FINGER PROTEIN ZAT12 1 156 - -
Aed3g0139 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Aed3g0139 170 SMART c2h2final6 30 52 IPR013087 -
Aed3g0139 170 SMART c2h2final6 83 105 IPR013087 -
Aed3g0139 170 Pfam C2H2-type zinc finger 29 55 - -
Aed3g0139 170 Pfam C2H2-type zinc finger 83 107 - -
Aed3g0139 170 Gene3D Classic Zinc Finger 59 130 - -
Aed3g0139 170 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Aed3g0139 170 MobiDBLite consensus disorder prediction 109 133 - -
Aed3g0139 170 Gene3D Classic Zinc Finger 26 50 - -
Aed3g0139 170 SUPERFAMILY beta-beta-alpha zinc fingers 28 105 IPR036236 -
Aed3g0139 170 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Aed3g0139 170 PANTHER ZINC FINGER PROTEIN ZAT5 1 156 - -
Aed3g0139 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0139 Aed-Chr3 1023609 1024121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0139 1 161 C2H2 Transcription Factor Family AT2G28710 43.976 4.70e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed3g0139 zf-C2H2_6 6.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0139 - - gmx:100781134 271.552