Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0129 ATGGCCGACCACATCGACATGTCTCTCGACGACGTTGTGAAGCGCTCCGCCGAGGCCGCAGCTGCTCTCCGCCGAAACGCGGTTGTTCGCAACCCGGCCAGAGCGACGCCGTACCCCATTCCGCAGGTAAGGCAACGGAGCGAGGATGCATTTACAGAAATGGTTGACAGTGGCACCAAACTCTATATATCTAACTTGTGTTACAGTGTTTCCGACAATGATATCAAGCTGCTGTTCTCGGAGGATGGTGAATTGAAAAGGTGCAGCGTTCATTATGACCAGAGTGGGAGATCAATGGGAACAGCAGAAGCTGTGTTCGCGAGGCATTCTGATGCTTTAGAAGTCATCAAGAAATACAACAATATGATTCTTGATGGAATGCCATTGAAAATTGAGCTTGTTGGAGCAAGTTCGTCTTCTTCTTCTTCTGCTGCTGCTGCTGCTGTCAGGCCTCTTTGTCAAATGGGAAGAGGAAGACCAAATGATTATGTCCATTTAAGCATACGAGAAAGGCTTGGAGGTAGTGGGCTCCATAATGAGTTTGCACAGGGCCACTTTCCAAGGGGCCGTGGAGAAGAGAAGGATCATAACTTTGAGAGGGTTCACCGCCATCAGAGGAGAGGCCACGCAAAAGTAAAGGGCAATGTTGGAAAGCTGACTGTTAAAGATCTTGATGATGACTTGGAGAGGTATCACTCAGAGGCTAACCAATCAGAGACTAAGCGGGTGGTTAAAAAAAACAATGCAAAGTGA 753 0.4821 MADHIDMSLDDVVKRSAEAAAALRRNAVVRNPARATPYPIPQVRQRSEDAFTEMVDSGTKLYISNLCYSVSDNDIKLLFSEDGELKRCSVHYDQSGRSMGTAEAVFARHSDALEVIKKYNNMILDGMPLKIELVGASSSSSSSAAAAAVRPLCQMGRGRPNDYVHLSIRERLGGSGLHNEFAQGHFPRGRGEEKDHNFERVHRHQRRGHAKVKGNVGKLTVKDLDDDLERYHSEANQSETKRVVKKNNAK 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0129 250 PANTHER THO COMPLEX SUBUNIT 4A 6 234 - -
Aed3g0129 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 136 IPR000504 GO:0003723
Aed3g0129 250 MobiDBLite consensus disorder prediction 230 250 - -
Aed3g0129 250 SMART rrm1_1 60 132 IPR000504 GO:0003723
Aed3g0129 250 Gene3D - 41 222 IPR012677 -
Aed3g0129 250 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 6 234 - -
Aed3g0129 250 Coils Coil 221 241 - -
Aed3g0129 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 130 IPR000504 GO:0003723
Aed3g0129 250 SUPERFAMILY RNA-binding domain, RBD 39 134 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0129 Aed-Chr3 953603 954828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0129 58 133 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 5.74e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0129 K12881 - gmx:100785926 278.87