Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0102 ATGGATGAGCAAATTATGTCATCTCCTAATATATTGGTACAGTGTCGAATATGCCACGATGAGGATCAAGAGTCAAACATGGACACACCCTGTTCTTGTTGTGGCACATTGAAGTATGCACACAAAAAATGTGTTCAACGATGGTGCAATGAGAAAGGTGACACTATCTGTGAAATTTGCCAACAGCAACTTAAGCCTGGTTATACTGCACCTCCGTTGCCTCCTCTGTTACATTATGGTGATTCTCCTATAAATTTTAGAGGGAACTGGGAGATTTCAAGATGGGATCTTCATAACCATCAATTCCTAGCGATGTTTAATGCTAATCGTGAATTCCTAGACCTTGACTTTGAATATTCGTCAGCACCTTCTACAAGAAGCTTGATATTTTGTCGCATTATTGCCATTATTTTTATTGTTCTTCTTCTTTTACGCCATACACTTCCAATCATATTTATACTCAATGGAGCAAGAGCATATTCATTGGCAGTCTTTGCATTAGTAGTGTTGAGAACCATTGGAATGATTGTACCAGTCTATATAATGATTAACGCTATTATTGCAATCCAACGGTTTCAATATCAGGATCATCAAATTTCTCCTATGCAAGCAGCACATGAGGAAAATGAAATAGGACGATCTCAGTTGCGTGTCATTCACATTCAGTGA 669 0.3812 MDEQIMSSPNILVQCRICHDEDQESNMDTPCSCCGTLKYAHKKCVQRWCNEKGDTICEICQQQLKPGYTAPPLPPLLHYGDSPINFRGNWEISRWDLHNHQFLAMFNANREFLDLDFEYSSAPSTRSLIFCRIIAIIFIVLLLLRHTLPIIFILNGARAYSLAVFALVVLRTIGMIVPVYIMINAIIAIQRFQYQDHQISPMQAAHEENEIGRSQLRVIHIQ 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0102 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 69 IPR013083 -
Aed3g0102 222 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 2 210 IPR033275 -
Aed3g0102 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 2 210 - -
Aed3g0102 222 SUPERFAMILY RING/U-box 13 64 - -
Aed3g0102 222 CDD RING_CH-C4HC3_MARCH 15 61 - -
Aed3g0102 222 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Aed3g0102 222 SMART ringv_2 14 61 IPR011016 GO:0008270
Aed3g0102 222 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Aed3g0102 222 Pfam Protein of unknown function (DUF3675) 66 186 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0102 Aed-Chr3 763791 766870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0102 14 61 C3H Transcription Factor Family AT2G37950 41.176 2.11e-06 45.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0102 3 763791 766870 Aed3g0102 3 763791 766870 ECH