Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0094 ATGGATTCCGAAACCCTAGACTCCACCCAACTCTTCCTTACCGCCCTCAAAACCCAACCCCCTCCACCATCCCTCCACCCACTCCCACCTTCCATCCCTCACTCCAAACTCATCCCCCACACACGCTTCCTCGTCGACGCCTTCCGCCACGCCGGCCCCCACTCCCATTCTTACTTCCTTTCCCACTTCCACTCCGACCACTACTCCGGCCTCTCCGCCACCTGGTCCCGCGGCGTCATCTTCTGCTCCCACACCACCGCTGCCCTCCTCCGCCACATCCTCCTCGTCGCCGCGGCCTTCGTCGTCCCCCTCCCCCTCTGCCAACCGCTCCGCATCGACGGCGCCCAAGTCACCCTTCTCGACGCCAACCACTGCCCCGGCGCCGTCCAGTTCCTCTTCTCCGTCCCCCACGGCACCACCTCCTCCGCCCTCAGGTACGTCCACACCGGCGATTTCCGCTTTAATAATTCCATGCTCTCAGAAGCCTCCCTCGCCCCCTTCGTCGGTGCTGACGCGGTGTTTCTCGACACTACCTATTGCAACCCTAAGTTCGTGTTCCCCTCGCAAGAGGAGTCTATTGATTACGTTGCCAGTGTTGTGGAGAGCGTTGAGCGCGAGTGTGAGCATAATAGTAACGATAAAGTCTTGTTTCTTGTTGCTACTTATGTCATTGGGAAGGAGAAGATTTTGCTTGAGCTTGCACGTAGGTTTAAGAGGAAGATACATGTTGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGATACTGGTCAGTTTACGGAGGATGAGAAGGAGACTAATATTCATGTCGTTGGCTGGAATGTGTTGGGGGAGACTTGGCCTTACTTCAGGCCTAACTTTGTTAGGATGAAGGAGGTTATGGCTGAGAGAGGGGGATCACACTCCAAGGTTGTCGGCTTTGTTCCTACTGGATGGACCTATGAAGTGAAGCGGGGTAGGTTTGCTGTCAAGTCCAAGGATTTGTTTCAGATTCATCTTGTGCCGTATAGTGAGCATTCCAACTATGATGAGCTCAGGGAGTATGTCAAGTTTTTGAAGCCCAAGCGTGTTGTTCCGACTGTGGGTGTGGATGTTGAGAAGAGTGACAGTAAACATGCTGACCAAATGAGGAAGTACTTTGTCAGGTTGGTTGATGAGACTGCCAACAAGCAGGACTTTTTAAAGGGTTTTCATCGTGCCCCTGGTGAGAAGGGTGAAGCGGATTTCAAGGTTGTTAGTGATGCTCTGGAGAAAGAAGTCAAGGCATTGGAGAGGACAGGTGGTGATCAAAGTATTGAGCCAGGTGTGGCTGTGGGTTTGTCTTCTTTTATGGGAGATACTTGTACACAAGATCCTACTTTGCTGAATGATGAAGAGAAGGAGAAAGTAATTGAAGAACTGAGTTGTTGTTTGCCCACATGGGTGACCCGAAACCAGTTGTTGGATCTGATCAGCATCTCAGGGAGCAATGTTGTTGAAGCAGTTTCTAATTTCTATGAACGGGAAACTGAATTTCATGAGCAAGTGATTTCTTGTCAAACTCCTGTTTCAACATCCAAGTGCTTCTCATTAAATGACACAGATTCACTTGCAAAACCATTCCTTAATACAAACAACACTGCCAAAAACATAAATATTGACATTTTTCCAAGTCAAGACTCTAAATTAACTAACCTGAGGAAGAAAAGTACAGTGCCTAGTCCCATTTCTCCTGCCAAAAGGAAGAAAAGTAGTGTCAGTAAGCTAAGCAAAAAAGCCAAAGTCAAAGCAAAGTCTGAACCAAGTGGTTCAAAGCAGGCCACAATCACAAGATTCTTCAGTAAAGTAATACCTGAGATGCCTGGTGGTGCTCAATCTGATAATTCTGAAACAAAGCTTGACCAAAGCTCTAAAGTTGAAGACTCATTGCCAACTGATGATGGACAAATGTACAAGGATGAAGTTGATCAATTTATGCAAATAATAAATGGGGATGAGTCATTAAAAAATTATGCCATCACTATAATTGAGAAGACAAAAGGTGACATCAGTAAGGCATTGGACATATATTACTCGTGTTGGAGAGATGGACAGCCTGCACCATATTTACATATTGCACGAACCTTCAACCTGCTTGAGGGTGAGAAAGGAAAGATTAAAGCTACTTCATTGCTATGCAATATGTTCAGAAGTTTGTTGGCCTTATCTCCAGCTGATGTGCTTCCAACTGTGTATCTATGCACTAACAAAATTGCTGCGGACCATGAAAATAAGGAACTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAGGAAGCATGTGGAACAAATCGATTGAAAATAAGGGAGATGTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAGTGCCGTCAAACACAGAGATTGCTTGCACCACCTACGCCACTCCTCATTAAGGATGTATTCTCTGCACTACAAAAGATAAGTGTACAAACAGGCAGTGGAAGCACATCTCGGAAGAAAGGCATCATTGTTCATCTCATGCGATCCTGCCAGGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTCAGGAACCTAAGGATTGGGGCAATGCTTAGAACTGTCTTGCCTGCATTGGCTCATGCTGTTGCTATGAGTTCACACCAAGAAGGAACTGCGGAAAATTTAAAGGAGAAACTTCAGGTTCTTTCTATGGCAGTTGTTGAAGCATATAACATACTGCCAAATTTGGATCTCATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTCGGTTTCAAGTTTATCAATGATTCCAGGAATCCCTATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCCCAAGCATTGAAGCTATTTGAAAATAAAGCACTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAAATTAGTTGATGGATCAATTCGTGTTTTTTCAAGAAATGGGGATGAATCAACTTCGAGATTTCCTGATCTGATTGACATAATTAAGGAATCCAGCAAGCCTGTTGCATCAACTTTCATAATGGATGCAGAAATTGTTGGCATTGACAGAAAAAATGCATATAGGATTATGTCTTTCCAGGAGTTATCTTCACGTGGGAGAGGTGGCAAAGATACATTAGTAACTGCAGAGAGCATCAAGGTGGATATTTGCATCTTTGTCTTCGATATCATGTTCGCAAATGGAAAGCAGTTATTGGGTTTTCCTCTCCGCCTTAGGCGAAAGTATCTGAAGGATTTGTTCTATGATGAGAAAGCTGGGTATTTTGAATATGCAAAGGAAACAACTATCGAAGCAGATGATGCTTGCTTAACCTGTGAAGCCACATTAACTAAGATAAATGCTTTCCTGGAAGATGCACTTCGCTCTTCATGTGAAGGAATTATGTTGAAAACATTGGATGTTGATGCTGGGTATTCTCCATCAAAGCGTTCTGACAAATGGTTAAAAGTCAAGCGAGATTATGTGGAAGGATTAAATGACACTCTTGATTTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAAGCAGGATGGTATAGTCCATTTCTTATGGCATGTTTCAATCCTGAAACAGAGGAGTATCAAAGTGTATGTCGTGTGATGTCTGGAATCTCAGATTCATTTTACATAGAGTTAAAAAAAATATTTTGGACCTTGAAGAATGCCAAAGCAATTTTTCAGGGTGGGGTTGGACAGTTTTGTGTTGCTATGGAGAGGGGTGGAGGGAATATGAAAGAATTGTTCTCTGATGAGAAAGTCTTGTCCAAAAAACCGCCATACTATCAAACAGGAGAGGCACCAGACATGTGGTTTTGTCCACAAGTCGTTTGGGAAATAAAAGGAGCAGACTTTACAGTATCTCCGGTTCATCATGCTGCCATTGGTTTAGTTCACCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTCGCTGTGTCTCAGACAGAAGCCCAGAAGAATGTAGCACAGCTGCTGATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTCACAGCTGAAGACTGA 4065 0.4418 MDSETLDSTQLFLTALKTQPPPPSLHPLPPSIPHSKLIPHTRFLVDAFRHAGPHSHSYFLSHFHSDHYSGLSATWSRGVIFCSHTTAALLRHILLVAAAFVVPLPLCQPLRIDGAQVTLLDANHCPGAVQFLFSVPHGTTSSALRYVHTGDFRFNNSMLSEASLAPFVGADAVFLDTTYCNPKFVFPSQEESIDYVASVVESVERECEHNSNDKVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLRVLGYGDTGQFTEDEKETNIHVVGWNVLGETWPYFRPNFVRMKEVMAERGGSHSKVVGFVPTGWTYEVKRGRFAVKSKDLFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGVDVEKSDSKHADQMRKYFVRLVDETANKQDFLKGFHRAPGEKGEADFKVVSDALEKEVKALERTGGDQSIEPGVAVGLSSFMGDTCTQDPTLLNDEEKEKVIEELSCCLPTWVTRNQLLDLISISGSNVVEAVSNFYERETEFHEQVISCQTPVSTSKCFSLNDTDSLAKPFLNTNNTAKNINIDIFPSQDSKLTNLRKKSTVPSPISPAKRKKSSVSKLSKKAKVKAKSEPSGSKQATITRFFSKVIPEMPGGAQSDNSETKLDQSSKVEDSLPTDDGQMYKDEVDQFMQIINGDESLKNYAITIIEKTKGDISKALDIYYSCWRDGQPAPYLHIARTFNLLEGEKGKIKATSLLCNMFRSLLALSPADVLPTVYLCTNKIAADHENKELNIGGSLVTAALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGSGSTSRKKGIIVHLMRSCQEKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMSSHQEGTAENLKEKLQVLSMAVVEAYNILPNLDLIVPSLMNKGIDFSVSSLSMIPGIPIKPMLAKITNGIPQALKLFENKALTCEYKYDGQRAQIHKLVDGSIRVFSRNGDESTSRFPDLIDIIKESSKPVASTFIMDAEIVGIDRKNAYRIMSFQELSSRGRGGKDTLVTAESIKVDICIFVFDIMFANGKQLLGFPLRLRRKYLKDLFYDEKAGYFEYAKETTIEADDACLTCEATLTKINAFLEDALRSSCEGIMLKTLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGISDSFYIELKKIFWTLKNAKAIFQGGVGQFCVAMERGGGNMKELFSDEKVLSKKPPYYQTGEAPDMWFCPQVVWEIKGADFTVSPVHHAAIGLVHPSRGISIRFPRFIRCVSDRSPEECSTAADIVEMFHSQTRKMDVTAED 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0094 1354 Pfam ATP dependent DNA ligase C terminal region 1185 1325 IPR012309 GO:0003910|GO:0006281|GO:0006310
Aed3g0094 1354 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 755 1341 IPR000977 GO:0003910|GO:0005524|GO:0071897
Aed3g0094 1354 SUPERFAMILY Nucleic acid-binding proteins 1168 1344 IPR012340 -
Aed3g0094 1354 Gene3D - 185 342 - -
Aed3g0094 1354 MobiDBLite consensus disorder prediction 629 645 - -
Aed3g0094 1354 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 3 689 - -
Aed3g0094 1354 Pfam ATP dependent DNA ligase domain 939 1159 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aed3g0094 1354 Gene3D DNA ligase/mRNA capping enzyme 968 1099 - -
Aed3g0094 1354 Pfam DNA repair metallo-beta-lactamase 261 367 IPR011084 -
Aed3g0094 1354 SUPERFAMILY Metallo-hydrolase/oxidoreductase 41 365 IPR036866 -
Aed3g0094 1354 CDD OBF_DNA_ligase_I 1168 1343 - -
Aed3g0094 1354 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 895 1161 - -
Aed3g0094 1354 MobiDBLite consensus disorder prediction 616 645 - -
Aed3g0094 1354 MobiDBLite consensus disorder prediction 560 579 - -
Aed3g0094 1354 CDD Adenylation_DNA_ligase_I_Euk 930 1162 - -
Aed3g0094 1354 CDD SNM1A-1C-like_MBL-fold 32 182 - -
Aed3g0094 1354 PANTHER DNA LIGASE 3 689 - -
Aed3g0094 1354 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 684 922 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aed3g0094 1354 Gene3D - 1164 1353 IPR012340 -
Aed3g0094 1354 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 963 971 IPR016059 GO:0003909
Aed3g0094 1354 Gene3D - 38 364 IPR036866 -
Aed3g0094 1354 Gene3D - 676 941 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aed3g0094 1354 Gene3D - 950 1163 - -
Aed3g0094 1354 Pfam DNA ligase N terminus 697 873 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aed3g0094 1354 ProSiteProfiles ATP-dependent DNA ligase family profile. 1050 1197 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aed3g0094 1354 MobiDBLite consensus disorder prediction 560 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0094 Aed-Chr3 723828 735047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0094 688 1344 Core DNA Replication Machinery Family AT1G08130 37.178 2.24e-157 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0094 - - aip:107635689 1871.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0094 3 723828 735047 Aed3g0094 3 723828 735047 ECH