Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0089 ATGCAGGGAAGTAATTTCAATCTACCTATGGATTTCAATAATAATTCAGTTTCAAAAAATTTACCGTTGCATTCCATGTTGGCGCCCTCTCATCCAATGCCTCAATATCATGAAAAGGATGGAGAGCAGGAGGAGAAACTCCGATCATTCTGGGAGAAGCAGGTACTTAATATTCAAATTGCTGAAGCATTTAAGAGCCAGCAAAAGTTGCCGCTAGCTAGAGTCAAAAGGATGATGAAATCAGAACTGGATGTTCAGATGATAAGTGCTGAAACTCCGATGGTGATGTCAAAAGCATGTGAGATTTTCATTCAGGAGCTCACTTTTCGTGCCTGGATGAATGCTGAAAAGAGCAATAATCGTACTGTGCAGCCTTGTGACGTTGCCAATGTTATTATGCAAACTCATACCATGAATTTCCTCACCGACATTATTCCAAAGGTTCTTTTCTTCTTACTAGCTTGCTTATTGTTGCAGGAAGACAATGTTGGAAACATCGCAGATGGAAGCCTAGTTGCCTTGCCTTACACTGTTGGTTTTATGGAAAATTCAATGATGAATATGACCACTGAAGAGAATGGTAGAAACATTGCACAAGGGAGCCAAATTGCTCTGCCTTACACTACTGATATTATGGAAAATTATATGAATATGATGCAACTGGACAATGAAGACAATGCTGGAAACATTGAAGAAGGAAGTCAAGTTACCCTACCTTACTCTACTGGTTTTGTGGGAAATCCTATGATGAATATGGGTAGTGACTTGGAGGCAGGAAATCAAGTGATTCCGGATGAACCCAACATGATGCAGCCACCCTTTATGCCTTCAGATCAACTGCCTTACAATTTTCAACCCAATGTAAGAAGAACATTGTTAGTTAATACTCCAAAACAGAAAAATAATATTTTATTTTCTTTCTTTCTTTTACATATTCATGTGAATAATGTTATAGTTCTATATTTCGTCATATTGCAGTGA 981 0.3812 MQGSNFNLPMDFNNNSVSKNLPLHSMLAPSHPMPQYHEKDGEQEEKLRSFWEKQVLNIQIAEAFKSQQKLPLARVKRMMKSELDVQMISAETPMVMSKACEIFIQELTFRAWMNAEKSNNRTVQPCDVANVIMQTHTMNFLTDIIPKVLFFLLACLLLQEDNVGNIADGSLVALPYTVGFMENSMMNMTTEENGRNIAQGSQIALPYTTDIMENYMNMMQLDNEDNAGNIEEGSQVTLPYSTGFVGNPMMNMGSDLEAGNQVIPDEPNMMQPPFMPSDQLPYNFQPNVRRTLLVNTPKQKNNILFSFFLLHIHVNNVIVLYFVILQ 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0089 326 Gene3D Histone, subunit A 34 147 IPR009072 GO:0046982
Aed3g0089 326 SUPERFAMILY Histone-fold 13 141 IPR009072 GO:0046982
Aed3g0089 326 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 29 209 IPR027170 GO:0003700|GO:0006355|GO:0016602
Aed3g0089 326 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 69 131 IPR003958 -
Aed3g0089 326 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 29 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0089 Aed-Chr3 693620 696005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0089 49 181 CCAAT-HAP5 Transcription Factor Family AT1G54830 39.098 1.25e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aed3g0089 CBFD_NFYB_HMF 5e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0089 - K08066 gsj:114370134 178.718