Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0057 ATGCGGATGAGTTGCAATGGATGTCGAGTTCTAAGAAAAGGTTGCAGTGAAAATTGCAGCATCCGACCCTGTTTACAATGGATCAAAAGCCCAGAATCCCAAGCCAATGCTACTGTGTTTCTCGCTAAGTTCTATGGCCGTGCTGGTCTCATGAACCTCGTTAACGCAGGCCCCGAACATCTTCGTCCAGCGATCTTTCGTTCGTTGTTGTACGAGGCATGCGGTCGGATAGTGAACCCGATTTACGGCTCTGTGGGTTTGTTATGGTCTGGGAGCTGGCAGCTGTGCCAAGCCGCCGTGGAAAACGTCTTGAAAGGCGCACCGATTACGCCGATCACTTCCGAAGCCGCGGCTAGCGGGCGGGGCCCACCCCTCAAGGCTTACGACATACGCCACGTGTCCAAAGACGAGAACTCCGCCGCGTCCAACGAAACTCAGCACCAACGAGTCAAGACTCGTTCTCGAGTCAAGCGACCCCAAGCCAACAACAACGCCAAGCCCAAATCCACCTCCAACGACAATAAGGAAACCGAATTGGGTTCGGATGAACCGGGTTTGGTGACATGCCAGTGGACCGAAGAGGTGTTGAACCGGGCTGGAAGTCACGATTCGTCGCTGAGCCACCAGTCGGAGGCGGCGAATACGGTGGAGAGCGAGAGCATGGTGTCGGTGGAGACGGCGGAGACTTCGATTCTCTTCCGAGATGAACCGGAATCCAACCCCAAGCGGGTGGACCGAACCGATGATGTTGGTTTAGAGCTTACGCTTGGGTTCGAACCGGTTTCACGTGCGCATCACGTGGTTCCGGTGAAGAAGAGAAGGATCGAGTTGAAGGATTTTAGCGGCTCGGCTGAGAATGGCTCGTGCAAGATGGAGCTGGGCCTTGAATGCACGGCTTGA 900 0.5511 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASGRGPPLKAYDIRHVSKDENSAASNETQHQRVKTRSRVKRPQANNNAKPKSTSNDNKETELGSDEPGLVTCQWTEEVLNRAGSHDSSLSHQSEAANTVESESMVSVETAETSILFRDEPESNPKRVDRTDDVGLELTLGFEPVSRAHHVVPVKKRRIELKDFSGSAENGSCKMELGLECTA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0057 299 MobiDBLite consensus disorder prediction 135 186 - -
Aed3g0057 299 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Aed3g0057 299 MobiDBLite consensus disorder prediction 198 223 - -
Aed3g0057 299 PIRSF AS2 1 298 IPR017414 -
Aed3g0057 299 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 296 - -
Aed3g0057 299 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Aed3g0057 299 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0057 Aed-Chr3 502360 504157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0057 1 295 AS2 family AT3G02550 58.586 8.77e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed3g0057 LOB 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0057 - - gmx:100807854 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0057 3 502360 504157 Aed3g0057 3 502360 504157 ECH
Aed3g0057 3 502360 504157 Aed3g1106 3 8933959 8937533 ECH
Aed1g1848 1 15834582 15835229 Aed3g0057 3 502360 504157 ECH