Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0022 ATGGCATCAACATCTTGCGTTAGAGAGACAACTTCAGTTCCAATGTCTCAACCATATCCACCGCCAATTGCAAAATATGAGGATGTTGTGGCAAATCCTAAACTCTTCATGTTTACTTTGGAGAAGCTCCACGCTTCTATGGGCACCAAGTTCATGATTCCTATCATTGGTAGAAAAGAACTAGATTTGAATCGCCTCTTTATTGAAGTCACTTCTCGTGGAGGGTTTGAGAAGCTTATTAAAGAAAGAAGATGGAAAGAAGTCACTACAGTTTTCAATTTTCCATCAACAGCCACAAATGCTTCCTATGTGTTGCGAAAATACTATTTTTCATTGCTTTACCACTTTGAACAAATATATTACTTTAAAGCCAATCAGTGGACCCCTACAACTTCTTTATCAGATGCTCAACAAAATCAATCTGCTCAACGAGTACAATTTTCGCAGCCTTCTCTAAGAAATAGTTCATCTGTTTTTCAACCGTCAAGGGTTAATGCTGCTGAATTGCCACAAGGATCTTCAGTAGTTGGAGTTATAGATGGGAAGTTTGAAAGTGGGTATCTAGTTTCTGTTTCAGTAGGTTCACAAATGCTTAGAGGTGTACTTTACGAGGCTCCACAGATCCTCGCTTCTGCATCAAATCAAAACAATGTCCCTGCTTCAATGGGTGTTCGTCGTCGTCGAAGGAAGAAATCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGTTACAATTTCTTTTTTGCTGAGCAACATGCAAGACTCAAGCAACTACACCATGGCAAAGACAGGGATATTAGTAGAATGATTGGTGAACTTTGGAACAAGTTAAAAGAGCCTGAAAAATCTGTTTATCAAGAGAAGGCTATTAGAGATAAAGAGAGGTACAAGGCAGAAATGGAGGATTATCGTGAGAAACTGAAGATGGGCCCTGTTGTTATCAGTGATGTTGCATCGTTACAACAACAACTTCCTGAAGCAGATGTGGATGTAAAATTGGTAGGTTCTGAAGATAGCAGTTCTGGTGGAAGTGAACATGAAGATGCCAATATGGATGTTGAAACTACCTATGATGGTCTTGAGTTTTTTCCCCATTGTAAAAATATGCTAACACTGTTTTAG 1137 0.3914 MASTSCVRETTSVPMSQPYPPPIAKYEDVVANPKLFMFTLEKLHASMGTKFMIPIIGRKELDLNRLFIEVTSRGGFEKLIKERRWKEVTTVFNFPSTATNASYVLRKYYFSLLYHFEQIYYFKANQWTPTTSLSDAQQNQSAQRVQFSQPSLRNSSSVFQPSRVNAAELPQGSSVVGVIDGKFESGYLVSVSVGSQMLRGVLYEAPQILASASNQNNVPASMGVRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKQLHHGKDRDISRMIGELWNKLKEPEKSVYQEKAIRDKERYKAEMEDYREKLKMGPVVISDVASLQQQLPEADVDVKLVGSEDSSSGGSEHEDANMDVETTYDGLEFFPHCKNMLTLF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0022 378 MobiDBLite consensus disorder prediction 214 248 - -
Aed3g0022 378 CDD HMGB-UBF_HMG-box 242 306 - -
Aed3g0022 378 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 242 309 IPR009071 -
Aed3g0022 378 Gene3D - 25 144 IPR036431 GO:0003677
Aed3g0022 378 SUPERFAMILY ARID-like 28 132 IPR036431 GO:0003677
Aed3g0022 378 Coils Coil 291 311 - -
Aed3g0022 378 CDD ARID_HMGB9-like 32 117 IPR045303 GO:0003677
Aed3g0022 378 Pfam HMG (high mobility group) box 242 309 IPR009071 -
Aed3g0022 378 SMART hmgende2 241 310 IPR009071 -
Aed3g0022 378 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 353 - -
Aed3g0022 378 SMART bright_3 31 122 IPR001606 GO:0003677
Aed3g0022 378 ProSiteProfiles ARID domain profile. 30 121 IPR001606 GO:0003677
Aed3g0022 378 SMART ARID_2 27 117 - -
Aed3g0022 378 Pfam ARID/BRIGHT DNA binding domain 34 117 IPR001606 GO:0003677
Aed3g0022 378 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 9 353 - -
Aed3g0022 378 Gene3D High mobility group box domain 225 316 IPR036910 -
Aed3g0022 378 SUPERFAMILY HMG-box 230 313 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0022 Aed-Chr3 200837 202598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0022 1 336 ARID Transcription Factor Family AT1G04880 58.127 1.79e-126 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aed3g0022 ARID 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0022 - - gmx:100807028 474.937