Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0020 ATGGCTTCATCTTTGGAGGAGCTTCTTGCAAAGGAGGGGTTCAAAGGAATCAGAAGAAGAGTGACAAGGTCTAGATCCTCCTTCCACCATGGTGCTTCAAGTGACCCTCTTTACTCTTTCCAAGGGAGATTTTGTGTTTCAAGTGAGAGAATTCCAACACAGAGAAGAGATAATATTTTTATGGATCAACGGTTGAAGAATGCAACTGAGAAGAACAAGTCTTGTATGCTTGGACACTCTAGTCTTGCTCTCGATGAAGTTGCAGTCCAAGCAGTAGTTTCCATTCTAAATGGCTATATAAAGCGTTTTCCAAAAGATGAGGATTTCCGGTCAACACTGCGTCACAAATGTTTCTCCTCTTTGAATTTGATTGAACGAGAAGAAGAGAAGAATACGGAGACCAATGTGATAACAAGTCTTGAGCAAGCAATCGAGGCCATTGAGCAAAGTGCCGAGGAACCTATATCATTATCTACCATGTATCTCAAAAGAAGCACAATGCAGCTTAGCATTATTACAGGTTTGAGTTTAAATGATTTGAAGTACGAGTGTACCTGTGGGATTCCAAATTACAAGTTGTCAGCCTGTGCTCATCTTTATCTCAGTGTAGTATACATGATGCAGAAAAAAAATAAGGTCTCAGCTAAGCATCTCTTGCAAGTGTTTTCTGATTCTCCTTTTCAGGCACGCACTGTATTGTTGCCTGAACTGTGGGATCATCTATTTTCTCCACAGTTTTCTCATTTGAAGGCATGGCACACCCAGGAAGCAACCAAAACAAGAAAGCTAAAACTTCTTCAAAATCTCTATAATCAACATTTGGACTCTGGAACTCATTTATATGCTGTATACTACAAAGATTGGCTCACTGATGGAGTTGAATCTCCTCCTATTCCTTCAATTTCCATTCCATCACTTCCACTTTCTCATTCTTTTGAGTCTGCTACCTCCGTTGACCCATTCTCACCACAGTCAATGGTCAGCAAGAAACTCTATGATTCTATGTTTGGTAGCACGACCAAACCTGGACTCAACGATTATGATTCAACTATTCAGAAAGGAAATTCAACTACAGCTGCAGAAGAATGGCAGAAAAAGAATCTCAGCGATGACATTAATAACTCTTTCTCAATGCAAACTAATTTAAACAGCCACAGTATTATTGATGCTCTATCACATGAAAAGGCAAATGAACTTGTTCTTAAAAAGGAATTTATTTGTCCTCTTACTGGAAATCTCTTTGAGGAACCAGTTACCTTAGAGACTGGTCAAACTTTTGAAAGAGAGGCCATCAAAGCATGGTTTGAAAAGGGAAATAGAACATGCCCAGTGACAGGAAATGCTTTGGAATGTGTGATCATGCCATTTACCAACCTTATTCTGAAGCGTTTGATTGATAATTGGAAGTCAGAACGTTTTGATTACCTTATTGATCTTGCTTCTCAAACAGTGGAGAATTCGGAGGAGCTTAAGTTGAAAAAGAGGGATGAGGCTGCTGTTTTCAAGTTAGAGAGTCTTTTCTCATCTTTGAAAGAAGAGGAGGAAAAATCAACTTATGCTAAGCATCTCATCTCTTTAGGAGTTCTTCCATTTCTTTTTAGGAGGTTTGAACAGGGAAATGTCGAAGAAAAATCACATGTGGTGTCACTCTTGCTAAACTGTATTCAAGTGGACTCTGGTTGCATATATCAGATAGTACGGAGTGTAAACAGAAAATGTCTTCTTGAGCTTCTTCACAGTAAGGAGGCTACTCCAACAACAAATGCAATACTATTCCTTACCGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACCTCATTCATAAGTGGCTTGGCGGGTGAAAAAGTTGAGCCTCAAAAGTTTAGCATATACAGAGAGGTGGCTGTGAATTTCATTGCAGAGGCACTTGATTCCAGCTTAAATGATGAGAAAGGAAGAGAAAAGTGTTGCAGAGCACTTTTAATCTTGTGTAGCCATTTTTCTTCTAATAATGAAGAAGAAGAAGAAGAAAAAAGAGGTGAAGAGTTGCTAAAGAAGCTGTTAGAGTCGTTGATTGGTGATGGAGAAAGCCCGTTTTTGAAGAGCATATCTAGATGTTTAGATTCTAAGCACCTAGATTTGGTGAGAGCATGTCTAATAACTGTGACATGGTTGAGCTCCTCACTATCTACGCTATTCAGTGCTGGATTGCATCTTCCCGCCTTCTTATCCATCATTTCTCAGTTGAAAGGAATCTTGGAAAATGGAGAACTTGAGCTCAAGACTCTTGCTTCTTTGTCTTTGCTTAATTTCAGTAAAATATCAGAATGCAAAACGCTTTTGAAGACTATGGCAGAAGATATTGCTCCCCTTCTTCATGGACTTGTTGATGTAACATGGACTGCAAAACAGCTGCATGCCATTGTGTCTAGGGAGAATTTCTAG 2427 0.3923 MASSLEELLAKEGFKGIRRRVTRSRSSFHHGASSDPLYSFQGRFCVSSERIPTQRRDNIFMDQRLKNATEKNKSCMLGHSSLALDEVAVQAVVSILNGYIKRFPKDEDFRSTLRHKCFSSLNLIEREEEKNTETNVITSLEQAIEAIEQSAEEPISLSTMYLKRSTMQLSIITGLSLNDLKYECTCGIPNYKLSACAHLYLSVVYMMQKKNKVSAKHLLQVFSDSPFQARTVLLPELWDHLFSPQFSHLKAWHTQEATKTRKLKLLQNLYNQHLDSGTHLYAVYYKDWLTDGVESPPIPSISIPSLPLSHSFESATSVDPFSPQSMVSKKLYDSMFGSTTKPGLNDYDSTIQKGNSTTAAEEWQKKNLSDDINNSFSMQTNLNSHSIIDALSHEKANELVLKKEFICPLTGNLFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGNALECVIMPFTNLILKRLIDNWKSERFDYLIDLASQTVENSEELKLKKRDEAAVFKLESLFSSLKEEEEKSTYAKHLISLGVLPFLFRRFEQGNVEEKSHVVSLLLNCIQVDSGCIYQIVRSVNRKCLLELLHSKEATPTTNAILFLTELLSMKRRKDVTSFISGLAGEKVEPQKFSIYREVAVNFIAEALDSSLNDEKGREKCCRALLILCSHFSSNNEEEEEEKRGEELLKKLLESLIGDGESPFLKSISRCLDSKHLDLVRACLITVTWLSSSLSTLFSAGLHLPAFLSIISQLKGILENGELELKTLASLSLLNFSKISECKTLLKTMAEDIAPLLHGLVDVTWTAKQLHAIVSRENF 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0020 808 Coils Coil 664 685 - -
Aed3g0020 808 ProSiteProfiles U-box domain profile. 400 475 IPR003613 GO:0004842|GO:0016567
Aed3g0020 808 ProSiteProfiles Zinc finger SWIM-type profile. 169 207 IPR007527 GO:0008270
Aed3g0020 808 PANTHER OS04G0584500 PROTEIN 1 403 - -
Aed3g0020 808 PANTHER OS04G0584500 PROTEIN 402 806 - -
Aed3g0020 808 SUPERFAMILY ARM repeat 485 774 IPR016024 -
Aed3g0020 808 Pfam U-box domain 404 471 IPR003613 GO:0004842|GO:0016567
Aed3g0020 808 Gene3D - 480 804 IPR011989 -
Aed3g0020 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 475 IPR013083 -
Aed3g0020 808 SUPERFAMILY RING/U-box 398 472 - -
Aed3g0020 808 CDD RING-Ubox_PUB 405 446 IPR045210 -
Aed3g0020 808 SMART Ubox_2 404 468 IPR003613 GO:0004842|GO:0016567
Aed3g0020 808 PANTHER OS04G0584500 PROTEIN 1 403 - -
Aed3g0020 808 PANTHER OS04G0584500 PROTEIN 402 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0020 Aed-Chr3 171989 176144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0020 395 553 U-box Gene Family AT5G42340 29.825 1.73e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0020 - - gmx:100820501 1097.42