Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0011 ATGGAGAATAAGGTGAATTTTGTGAAGAATGGGGAAGTTAGATTGCCTCCAGGGTTCCGTTTCCACCCGACTGATGAGGAACTGGTCGTGCAATACTTGAAGCGCAAGGTCTTCTCCTGCCCTTTGCCAGCCTCTATCATTCCCGAGCTTGATGTTTGCTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATATTGAGCAAGAGAGGTACTTCTTTAGCACAAAAGAAGCCAAATATCCGAACGGGAATCGGTCCAATAGAGCCACTCATTCGGGTTATTGGAAGGCCACTGGGTTGGACAAACAAATTCTAACTTCCAAAGTTGTTGTGGGGATGAAGAAGACACTTGTTTTCTACAGAGGCAAGCCTCCTCATGGATCCAGAACTGATTGGATCATGCATGAGTATCGCCTCAACAATGCTTCTCAGCCTCAGCCAAGAGAGATGGCAAATTGGGTTCTATGTCGCATATTTTTGAAGAGGAGAAGTGGTGGTGCTAAAAATAGAGTGGATGGAGTGGTTTTCTATGACTTCTTAGCGCAGAAGAACAAGAGTGATTCCTCATCCTCGGCCGCCAGTGGAATTACACATGAATCAGATGAACATGAAGAGAGCAGTAGCTCCAATACAAGAACAAAACCTTAA 645 0.4543 MENKVNFVKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASIIPELDVCCKSDPWDLPGDIEQERYFFSTKEAKYPNGNRSNRATHSGYWKATGLDKQILTSKVVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLNNASQPQPREMANWVLCRIFLKRRSGGAKNRVDGVVFYDFLAQKNKSDSSSSAASGITHESDEHEESSSSNTRTKP 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0011 214 MobiDBLite consensus disorder prediction 183 214 - -
Aed3g0011 214 ProSiteProfiles NAC domain profile. 15 160 IPR003441 GO:0003677|GO:0006355
Aed3g0011 214 MobiDBLite consensus disorder prediction 196 214 - -
Aed3g0011 214 SUPERFAMILY NAC domain 11 160 IPR036093 GO:0003677|GO:0006355
Aed3g0011 214 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 209 - -
Aed3g0011 214 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 6 209 - -
Aed3g0011 214 Pfam No apical meristem (NAM) protein 16 138 IPR003441 GO:0003677|GO:0006355
Aed3g0011 214 Gene3D NAC domain 24 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0011 Aed-Chr3 93704 95209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0011 1 164 NAC Transcription Factor Family AT5G13180 74.699 2.92e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed3g0011 NAM 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0011 - - gmx:100170709 328.561